mRNA_P-wetherbeei_contig12881.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12881.1.1
Unique NamemRNA_P-wetherbeei_contig12881.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12881.1.1 vs. uniprot
Match: A0A835Z9V2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.230e-11
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QLEEMEDKETSATSVVLLDDGTLEFGATDGPLPKSSKGTW 120
            QLEE+EDKET+ATSVVL  DG++ FGATDGPLPKS+ G+W
Sbjct:   70 QLEELEDKETAATSVVLNGDGSVSFGATDGPLPKSTTGSW 109
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BLAST of mRNA_P-wetherbeei_contig12881.1.1 vs. uniprot
Match: A0A6U0KI98_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0KI98_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.480e-9
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 QLEEMEDKETSATSVVLLDDGTLEFGATDGPLPKSSKGTWEAQGDKIMM 147
            QLEE+ED++  +T V+L DDGT+  GATDGP P  S GTWE  GD   M
Sbjct:   50 QLEELEDRDDCSTEVLLKDDGTVTTGATDGPPPSESSGTWEFAGDTFKM 98
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BLAST of mRNA_P-wetherbeei_contig12881.1.1 vs. uniprot
Match: A0A7S2P4Y7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4Y7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.650e-9
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 QLEEMEDKETSATSVVLLDDGTLEFGATDGPLPKSSKGTWEAQGDKIMM 147
            QLEE+EDKET+ T ++L  D T+EFG TDGP P S  GTWE   D   +
Sbjct:   50 QLEELEDKETATTEILLKSDNTVEFGETDGPRPISCTGTWEHDEDSFKL 98
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BLAST of mRNA_P-wetherbeei_contig12881.1.1 vs. uniprot
Match: H6WBB0_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB0_VAULI)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-6
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 LEEMEDKETSATSVVLLDDGTLEFGATDGPLPKSSKGTWEAQ 129
            LEE+EDK++  TS+VL +DG++  GAT GP+P S++G W  +
Sbjct:   20 LEELEDKDSCETSIVLNEDGSVSLGATSGPIPMSARGEWSME 61
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BLAST of mRNA_P-wetherbeei_contig12881.1.1 vs. uniprot
Match: A0A7S1XJP5_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XJP5_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 7.770e-6
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 QLEEMEDKETSATSVVLLDDGTLEFGATDGPLPKSSKGTWEAQGDKIMM 147
            QL+E+EDKET  T++VL   GT+  G TDGP+P   +G+W   G   M+
Sbjct:   80 QLDELEDKETMCTALVLNAGGTVTCGKTDGPVPSKVEGSWALTGSDFML 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z9V2_9STRA3.230e-1175.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U0KI98_9STRA1.480e-957.14Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2P4Y7_9STRA6.650e-955.10Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
H6WBB0_VAULI2.150e-650.00Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A7S1XJP5_9RHOD7.770e-646.94Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12881contigP-wetherbeei_contig12881:82..228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000370.1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.896484-CDS-P-wetherbeei_contig12881:81..2161683185964.896484-CDS-P-wetherbeei_contig12881:81..216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12881 82..216 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.9063897-UTR-P-wetherbeei_contig12881:216..2281683185964.9063897-UTR-P-wetherbeei_contig12881:216..228Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12881 217..228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12881.1.1prot_P-wetherbeei_contig12881.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12881 82..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12881.1.1

>prot_P-wetherbeei_contig12881.1.1 ID=prot_P-wetherbeei_contig12881.1.1|Name=mRNA_P-wetherbeei_contig12881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
MEDKETSATSVVLLDDGTLEFGATDGPLPKSSKGTWEAQGDKIMM
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mRNA from alignment at P-wetherbeei_contig12881:82..228-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12881.1.1 ID=mRNA_P-wetherbeei_contig12881.1.1|Name=mRNA_P-wetherbeei_contig12881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig12881:82..228- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTTGAGGAGATGGAGGACAAAGAGACGTCGGCGACGTCCGTCGTATT
GCTGGACGACGGAACCTTGGAGTTTGGGGCGACCGATGGCCCGTTGCCCA
AGTCGAGCAAGGGCACCTGGGAGGCGCAAGGTGACAAGATTATGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12881:82..228-

>mRNA_P-wetherbeei_contig12881.1.1 ID=mRNA_P-wetherbeei_contig12881.1.1|Name=mRNA_P-wetherbeei_contig12881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig12881:82..228- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGACAAAGAGACGTCGGCGACGTCCGTCGTATTGCTGGACGACGG
AACCTTGGAGTTTGGGGCGACCGATGGCCCGTTGCCCAAGTCGAGCAAGG
GCACCTGGGAGGCGCAAGGTGACAAGATTATGATG
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