mRNA_P-wetherbeei_contig1005.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1005.2.1
Unique NamemRNA_P-wetherbeei_contig1005.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: A0A8J2ZA64_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Caldovatus sediminis TaxID=2041189 RepID=A0A8J2ZA64_9PROT)

HSP 1 Score: 202 bits (515), Expect = 1.710e-60
Identity = 118/204 (57.84%), Postives = 142/204 (69.61%), Query Frame = 1
Query:  172 SSSSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGAVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKG 783
            S+ S++WL RQ  DPYV+ A+    RSRAAFKL EL  R RLL+PG RVVDLGAAPGGW+ VAA +VG SG  V+A+DLL M PV G T ++ DF   ET+RRV E LGG  AD VLSDMAP  +G A+TDHLR +AL    L FA  VL PGG F+ K  +G  E+ LL+A R  FA VR  KP ASR  S+E Y++ATGF+G
Sbjct:   22 SAGSQRWLTRQLNDPYVRAAQAQGLRSRAAFKLLELDARFRLLRPGARVVDLGAAPGGWTQVAARKVGPSG-RVVALDLLPMEPVPGATVLQGDFREEETERRVEEALGG-PADLVLSDMAPNTTGHAATDHLRIVALAEIALGFALRVLAPGGAFVAKVFQGGAERGLLDALRRNFAAVRHAKPPASRKESSELYVVATGFRG 223          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: UPI0019B97B4A (RlmE family RNA methyltransferase n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019B97B4A)

HSP 1 Score: 202 bits (515), Expect = 1.940e-60
Identity = 116/204 (56.86%), Postives = 139/204 (68.14%), Query Frame = 1
Query:  178 SSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVG--SSGGAVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKG 783
            +S +WL RQ  DPYV+EAKR   RSRAAFKL E+  +HRLL+PG  VVDLGAAPGGWS +AA  V   +  G V+AVDL++M PV+GV  +R D T P+    +RE LGG+AAD VLSDM    +G   TDHLR + L    L  A D+L PGGTFL K L+G   KEL+      FAKVR VKPKASR  SAE Y+LATGF+G
Sbjct:   32 ASTRWLQRQLNDPYVEEAKRRGYRSRAAFKLVEIDDKHRLLRPGMIVVDLGAAPGGWSQIAAQRVQLMAGKGRVIAVDLVEMEPVSGVVQLRLDMTDPDAAGLIREALGGQAADVVLSDMHAPATGHKPTDHLRIMGLVEAALDLAEDILAPGGTFLAKALQGGASKELVARLNRSFAKVRHVKPKASRAESAEMYVLATGFRG 235          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: UPI001C686E97 (RlmE family RNA methyltransferase n=1 Tax=Caldovatus sp. SYSU G05006 TaxID=2865671 RepID=UPI001C686E97)

HSP 1 Score: 201 bits (511), Expect = 7.720e-60
Identity = 119/215 (55.35%), Postives = 147/215 (68.37%), Query Frame = 1
Query:  172 SSSSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGAVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKGPGSSAETAGAG 816
            S+ S++WLARQ  DPYV+ AK    RSRAAFKL EL  +  LL+PG RVVDLGAAPGGW+ VAA +VG +G  V+A+DLL M PV G   ++ DF   ET+R+V E LGG A D VLSDMAP  +G A+TDH+R +AL    L FA  VL PGG F+ K  +G  E+ELL A +  FA VR  KP ASR  S+E Y++ATGF+G G+ A T G G
Sbjct:   22 SAGSQRWLARQLNDPYVRAAKAQGLRSRAAFKLLELDAKFHLLRPGARVVDLGAAPGGWTQVAARKVGPAG-RVVALDLLPMEPVPGAVVLQGDFREAETERQVEEALGGEA-DLVLSDMAPNTTGHAATDHMRIMALAELALDFALRVLAPGGAFVAKVFQGGAERELLAALKRNFAAVRHAKPPASRKESSELYVVATGFRG-GAGARTGGEG 233          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: UPI0019B45982 (RlmE family RNA methyltransferase n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI0019B45982)

HSP 1 Score: 200 bits (509), Expect = 1.640e-59
Identity = 116/204 (56.86%), Postives = 136/204 (66.67%), Query Frame = 1
Query:  178 SSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGG--AVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKG 783
            SSK WL RQ  DPYV  AKR   RSRAA+KL EL  ++R+LKPG  VVDLGAAPGGWS VAA  V + GG  AV+A+DL ++  + GV  I  DF    +Q  +   L GR AD VLSDMA   SG   TDHLR + LC E L FAADVL P G FL K L+G  E+ LL+A +  F  VR VKPKASR +SAE Y+LATGF+G
Sbjct:   33 SSKLWLQRQLNDPYVSAAKRDGFRSRAAYKLSELDDKYRILKPGQVVVDLGAAPGGWSQVAATRVKAEGGNGAVIAIDLTEIAAIPGVVIIHGDFLEEASQGTLTALLAGRRADVVLSDMAAPSSGHRQTDHLRIMGLCEEALAFAADVLAPDGMFLAKVLQGGAEQALLDALKRDFKLVRHVKPKASRADSAELYVLATGFRG 236          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: A0A160PKH2_9HYPH (Ribosomal RNA large subunit methyltransferase E n=12 Tax=Methylobacteriaceae TaxID=119045 RepID=A0A160PKH2_9HYPH)

HSP 1 Score: 199 bits (507), Expect = 2.890e-59
Identity = 114/203 (56.16%), Postives = 136/203 (67.00%), Query Frame = 1
Query:  178 SSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGAVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKGP 786
            S K+WL RQ  DPYV  AKR   RSRAAFKL E+ +R +LLKPG R+VDLGAAPGGWS VAA  VG SG  ++ +DLLD+ P+AG TFI  DF       R+ E LGG+A D VLSDMA   +G   TDHLRT+ L      FAA++L PGG FL K  +G  E  LL   +  FA VR VKP ASR +S+E Y+LATGF+GP
Sbjct:   28 SQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPGQRIVDLGAAPGGWSQVAAKIVGESG-RIVGIDLLDVEPMAGATFITLDFLDDSAPERLTELLGGKA-DLVLSDMAANTTGHKKTDHLRTIGLAESAAAFAAEILAPGGAFLAKVFQGGTEGSLLADLKRDFAVVRHVKPAASRADSSELYVLATGFRGP 228          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: A0A7W0XJ28_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W0XJ28_9HYPH)

HSP 1 Score: 199 bits (506), Expect = 3.190e-59
Identity = 112/204 (54.90%), Postives = 139/204 (68.14%), Query Frame = 1
Query:  178 SSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGG--AVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKG 783
            SS++WL RQ  DPYV  +K+   RSRAA+KL E+ +R +LLK G RVVDLGAAPGGWS VAAA +G++     V+A+D LDM P+ GV  ++ADF  PE    +RE LGG  AD +LSDMA   +G  +TDHLR +ALC     F+ DVL PGGTFL K  +G  E  LL A +  F KV+ VKP ASR +S E YLLATGF+G
Sbjct:   25 SSQRWLERQLNDPYVARSKQEGYRSRAAYKLLEIDERFKLLKSGRRVVDLGAAPGGWSQVAAARIGATDADPRVVAIDYLDMDPLPGVRILKADFLDPEAPALIREALGGHKADLLLSDMAAPTTGHRATDHLRIVALCEAAADFSRDVLAPGGTFLAKVFRGGTENVLLAALKRDFTKVQHVKPPASRPDSPELYLLATGFRG 228          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: A0A4R3LVE0_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3LVE0_9HYPH)

HSP 1 Score: 199 bits (507), Expect = 3.370e-59
Identity = 117/212 (55.19%), Postives = 139/212 (65.57%), Query Frame = 1
Query:  160 SRSVSSSSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGA--VMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKGPG 789
            +R  S+SS +WL RQ  DPYV++A+    RSRAA+KL EL  R  LLKPG RVVDLGAAPGGWS V AA VGS GG   V+A+D+L+M  + GV  +  DF       R+   LGG  AD VLSDMAP  +G   TDH+R +ALC   L FA  VLVPGG FL K L+G  E  LL   +  FA VR VKP ASR +SAE Y+LATGF+G G
Sbjct:   20 ARRRSTSSTRWLERQLNDPYVEKARAEGYRSRAAYKLIELDDRFHLLKPGARVVDLGAAPGGWSQVVAARVGSPGGKGRVVAIDILEMAAIPGVEVLHLDFLDAAAPERLTAALGG-PADVVLSDMAPATTGHRQTDHMRIMALCEAALEFARQVLVPGGAFLAKVLRGGTEGALLADMKRDFAAVRHVKPPASRADSAELYVLATGFRGKG 230          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: V5SBJ2_9HYPH (Ribosomal RNA large subunit methyltransferase E n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SBJ2_9HYPH)

HSP 1 Score: 200 bits (509), Expect = 3.620e-59
Identity = 116/212 (54.72%), Postives = 142/212 (66.98%), Query Frame = 1
Query:  160 SRSVSSSSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGA--VMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKGPG 789
            +RS ++SS++WL RQ  DPYV  +KR   RSRAAFKL E+  ++R LKPG R+VDLGAAPGGWS +AA  VGS GG   V+A+D L+M P+AGV     DFT PE +  +R  L   AAD VLSDMA    G + TDHLR + L      FA DVL PGGTFL K  +G  E++LL+  +  F  VR VKP ASR +SAE Y+LATGFKG G
Sbjct:   57 ARSRTASSQRWLERQLNDPYVAASKREGYRSRAAFKLIEIDDKYRFLKPGQRIVDLGAAPGGWSQIAAERVGSIGGKGQVVAIDYLEMEPLAGVEHAMIDFTDPEAEPWIRGKLRDGAADAVLSDMAAPTVGHSRTDHLRIMGLAEAAAHFAGDVLAPGGTFLCKVFQGGTERDLLDFLKQRFQTVRHVKPPASRADSAELYVLATGFKGRG 268          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: A0A3M1J730_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1J730_9PROT)

HSP 1 Score: 199 bits (505), Expect = 5.260e-59
Identity = 114/205 (55.61%), Postives = 136/205 (66.34%), Query Frame = 1
Query:  178 SSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSG--GAVMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFKGP 786
            SS +WL RQ  DPYV  A+    RSRAAFKL E+ +++ LLKPG RVVDLGAAPGGWS VAA  V   G  G V+AVD+ +M P+ GV  IR DF  P   +RVRE L G  AD VLSDMA   +G   TDHLR + LC   L FA +VL PGG FL K L+G  E++LL   +  F  VR VKP+ASR +SAE Y+LA GF+GP
Sbjct:   28 SSTRWLQRQLNDPYVARAREEGYRSRAAFKLLEIDRKYGLLKPGMRVVDLGAAPGGWSQVAARAVSPEGQEGMVVAVDISEMEPLPGVEVIRLDFLEPGAPQRVREALEGGLADAVLSDMAAPATGHRQTDHLRIIGLCEAALDFAEEVLAPGGAFLAKVLQGGTERDLLNRLKVNFTSVRHVKPEASRADSAELYVLAQGFRGP 232          
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Match: A0A6L5FR64_9HYPH (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FR64_9HYPH)

HSP 1 Score: 199 bits (507), Expect = 6.210e-59
Identity = 113/205 (55.12%), Postives = 139/205 (67.80%), Query Frame = 1
Query:  172 SSSSKQWLARQRRDPYVKEAKRLDTRSRAAFKLRELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGA--VMAVDLLDMVPVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHLRTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTVKPKASRGNSAESYLLATGFK 780
            S+SS+ WL RQ  DPYV  AKR   RSRAA+KL E+  +HR+LKPGGRVVDLGAAPGGWS +AA  VG+  G   V+A+D+LD+ P++GVTF+  DF  P    R++  LGG  AD VLSDMA   +G   TDHL+ +AL      FA +VL PGG  L K L+G  E  LL A +  FA V+ VKP ASR +SAE YLLATGF+
Sbjct:   58 SASSRAWLERQLNDPYVARAKREGYRSRAAYKLTEIDDKHRILKPGGRVVDLGAAPGGWSQIAARRVGADAGKGRVVAIDILDIPPISGVTFLHLDFLDPSAPERLKAALGG-PADVVLSDMAANATGHRKTDHLKIMALVEAAGDFACEVLGPGGALLAKVLQGGTEASLLAALKQRFASVKHVKPAASRADSAERYLLATGFR 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1005.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2ZA64_9PROT1.710e-6057.84Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI0019B97B4A1.940e-6056.86RlmE family RNA methyltransferase n=1 Tax=Methyloc... [more]
UPI001C686E977.720e-6055.35RlmE family RNA methyltransferase n=1 Tax=Caldovat... [more]
UPI0019B459821.640e-5956.86RlmE family RNA methyltransferase n=1 Tax=Chitinop... [more]
A0A160PKH2_9HYPH2.890e-5956.16Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A7W0XJ28_9HYPH3.190e-5954.90Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A4R3LVE0_9HYPH3.370e-5955.19Ribosomal RNA large subunit methyltransferase E n=... [more]
V5SBJ2_9HYPH3.620e-5954.72Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A3M1J730_9PROT5.260e-5955.61Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A6L5FR64_9HYPH6.210e-5955.12Ribosomal RNA large subunit methyltransferase E n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1005contigP-wetherbeei_contig1005:3950..5409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog648885.KB316283_gene4524
Preferred nameftsJ
PFAMsFtsJ
Model size1011
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02427
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.25e-60
EggNOG OGsCOG0293@1|root,COG0293@2|Bacteria,1MW1C@1224|Proteobacteria,2TSBW@28211|Alphaproteobacteria,1JSAZ@119045|Methylobacteriaceae
EC2.1.1.166
DescriptionSpecifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
Cds size852
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.7986038-UTR-P-wetherbeei_contig1005:3949..39881683185851.7986038-UTR-P-wetherbeei_contig1005:3949..3988Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1005 3950..3988 -
1683185851.8374224-UTR-P-wetherbeei_contig1005:5289..54091683185851.8374224-UTR-P-wetherbeei_contig1005:5289..5409Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1005 5290..5409 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185851.8079138-CDS-P-wetherbeei_contig1005:3988..44291683185851.8079138-CDS-P-wetherbeei_contig1005:3988..4429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1005 3989..4429 -
1683185851.8183038-CDS-P-wetherbeei_contig1005:4725..49421683185851.8183038-CDS-P-wetherbeei_contig1005:4725..4942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1005 4726..4942 -
1683185851.8277383-CDS-P-wetherbeei_contig1005:5095..52891683185851.8277383-CDS-P-wetherbeei_contig1005:5095..5289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1005 5096..5289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1005.2.1prot_P-wetherbeei_contig1005.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1005 3989..5289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1005.2.1

>prot_P-wetherbeei_contig1005.2.1 ID=prot_P-wetherbeei_contig1005.2.1|Name=mRNA_P-wetherbeei_contig1005.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MCEPSRRFAWTTFSRSVSSSSKQWLARQRRDPYVKEAKRLDTRSRAAFKL
RELQQRHRLLKPGGRVVDLGAAPGGWSVVAAAEVGSSGGAVMAVDLLDMV
PVAGVTFIRADFTAPETQRRVREWLGGRAADCVLSDMAPCFSGDASTDHL
RTLALCAEGLRFAADVLVPGGTFLGKFLKGRDEKELLEAARGGFAKVRTV
KPKASRGNSAESYLLATGFKGPGSSAETAGAGMATVAGTARMGGTKGVAF
MPAAGAGSVAGRDSSKSGEICVEGGGGKAFAPR*
back to top

mRNA from alignment at P-wetherbeei_contig1005:3950..5409-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1005.2.1 ID=mRNA_P-wetherbeei_contig1005.2.1|Name=mRNA_P-wetherbeei_contig1005.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1460bp|location=Sequence derived from alignment at P-wetherbeei_contig1005:3950..5409- (Phaeothamnion wetherbeei SAG_119_79)
GAGAGACGGGCGTCGATGACAGACGAGGCGGTAACGCCTTCTACCGACAA TCCTGCTGCTTTTAGGCGAACGTGAAAATATTCGCGGTTTTTCGAAGTGG CTTTCAAAATTTTGCCGTCGATGTGCGAGCCCTCCCGCAGATTTGCCTGG ACCACCTTCTCCCGCTCCGTTTCATCGAGCTCGAAGCAGTGGTTGGCAAG GCAACGCCGGGATCCGTATGTGAAAGAGGCAAAGCGCCTCGACACGAGAT CGCGAGCAGCGTTTAAGCTGCGCGAACTGCAGCAGCGGCACCGCCTCCTG AAACCTGGGGGAAGGTATGTTTTTTTGGTCTTCCCGCGTCTTCCATGACT GCATGCTTATCTGACAGGGCTTCTTTGTGGAGACTCACATCCTTTTCCGG TTCTCTTACGGGAAGAAGCTCCTTGGTGACGAATGTGCTGTTTGGACTGG CTGGCTGTCCGTGCCAGGGTCGTGGATCTTGGCGCGGCGCCCGGCGGCTG GTCTGTCGTGGCCGCCGCCGAGGTGGGAAGTTCAGGAGGAGCCGTCATGG CCGTCGACCTTTTGGACATGGTTCCCGTCGCCGGCGTCACTTTCATCCGA GCAGACTTCACTGCGCCCGAAACGCAGCGACGTGTGCGCGAGTGGCTGGG TGGGAGAGCCGCCGATTGTGTTCTTTCTGACATGGTGAGGCGCAGGGGTG GAGGTTTGGCAGGGGTGGAGGTTTGGGATCCATCCCAGAAGCACACTTAC GGGAATCTGTGGGTCACGGGAAAGGGGACTGCCACTGGCTGGATTCCCTT ATGAGCTGCGTTCATGTTGTTGAAAGCTGTTTCTGGAGAACTGCGTGATC TGGATGGACGCCCTTCTCGGCGTCGACGCGAGAGTCAAAGGAGCATCGGT TTGTTCCAGGCCGCTCTCAGTCAAGGAACTTTTCGCTTTGTCTTTTCCCT CTATTTATTCTTTGTTTTGGTCTGTGGCAGGCACCGTGCTTCAGCGGCGA CGCCTCAACCGACCACCTGCGTACCCTCGCGCTCTGCGCGGAGGGCCTGC GCTTCGCCGCGGACGTCCTAGTGCCCGGCGGAACCTTCCTGGGAAAATTT CTTAAGGGCCGGGACGAGAAAGAGCTGCTGGAGGCAGCGCGCGGCGGTTT TGCGAAGGTTCGGACTGTCAAGCCGAAGGCATCGCGGGGGAACTCCGCCG AGTCGTATTTGCTGGCGACGGGCTTCAAGGGGCCAGGGTCGTCTGCGGAA ACAGCCGGTGCCGGGATGGCAACGGTAGCGGGAACGGCGAGGATGGGAGG CACAAAAGGAGTAGCTTTTATGCCTGCGGCGGGGGCAGGGAGTGTCGCCG GCAGGGATAGTAGCAAAAGCGGCGAAATCTGCGTAGAAGGCGGTGGTGGT AAAGCATTCGCTCCGAGATAAGAAAAGACAGCGATACAAAAACAGTACAA CACATCGATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1005:3950..5409-

>mRNA_P-wetherbeei_contig1005.2.1 ID=mRNA_P-wetherbeei_contig1005.2.1|Name=mRNA_P-wetherbeei_contig1005.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig1005:3950..5409- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGAGCCCTCCCGCAGATTTGCCTGGACCACCTTCTCCCGCTCCGT
TTCATCGAGCTCGAAGCAGTGGTTGGCAAGGCAACGCCGGGATCCGTATG
TGAAAGAGGCAAAGCGCCTCGACACGAGATCGCGAGCAGCGTTTAAGCTG
CGCGAACTGCAGCAGCGGCACCGCCTCCTGAAACCTGGGGGAAGGGTCGT
GGATCTTGGCGCGGCGCCCGGCGGCTGGTCTGTCGTGGCCGCCGCCGAGG
TGGGAAGTTCAGGAGGAGCCGTCATGGCCGTCGACCTTTTGGACATGGTT
CCCGTCGCCGGCGTCACTTTCATCCGAGCAGACTTCACTGCGCCCGAAAC
GCAGCGACGTGTGCGCGAGTGGCTGGGTGGGAGAGCCGCCGATTGTGTTC
TTTCTGACATGGCACCGTGCTTCAGCGGCGACGCCTCAACCGACCACCTG
CGTACCCTCGCGCTCTGCGCGGAGGGCCTGCGCTTCGCCGCGGACGTCCT
AGTGCCCGGCGGAACCTTCCTGGGAAAATTTCTTAAGGGCCGGGACGAGA
AAGAGCTGCTGGAGGCAGCGCGCGGCGGTTTTGCGAAGGTTCGGACTGTC
AAGCCGAAGGCATCGCGGGGGAACTCCGCCGAGTCGTATTTGCTGGCGAC
GGGCTTCAAGGGGCCAGGGTCGTCTGCGGAAACAGCCGGTGCCGGGATGG
CAACGGTAGCGGGAACGGCGAGGATGGGAGGCACAAAAGGAGTAGCTTTT
ATGCCTGCGGCGGGGGCAGGGAGTGTCGCCGGCAGGGATAGTAGCAAAAG
CGGCGAAATCTGCGTAGAAGGCGGTGGTGGTAAAGCATTCGCTCCGAGAT
AA
back to top