mRNA_P-canaliculata_contig9905.24021.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9905.24021.1
Unique NamemRNA_P-canaliculata_contig9905.24021.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9905.24021.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.310e-6
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = -1 
Query:  123 AYAYLVRVTIPRIAIRASSSQLTTAPSEASVSRGAAHDVGPKISVVAKCLEGHLEMDDPETSAVVPQPSPLNGEVHSVMPTFFDSIHGGSSSPSPLGVG-DDSRQSA--RSVTHRLRWLAVRKLSFESGATR 509
            A A ++R+T+PR+ IRA S+ +  A +  S    A    G  ++V A+ +EGH E++DP T  +VP P                          PLG    DS   A  R  THRLRWLA+RK +F +G +R
Sbjct:  683 AAATIIRLTVPRVGIRACSTAVALAAAPPSSREVAGTSGGASVTVSAESVEGHFEVEDPGT--MVPPPXXXG----------------------PLGQEPQDSTAVATPRRETHRLRWLAIRKATFVTGGSR 790
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9905.24021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K0_ECTSI1.310e-634.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9905contigP-canaliculata_contig9905:2197..2909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.8797092-CDS-P-canaliculata_contig9905:2196..25981622817351.8797092-CDS-P-canaliculata_contig9905:2196..2598Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 2197..2598 +
1693495241.2177553-CDS-P-canaliculata_contig9905:2196..25981693495241.2177553-CDS-P-canaliculata_contig9905:2196..2598Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 2197..2598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.8909218-UTR-P-canaliculata_contig9905:2598..29091622817351.8909218-UTR-P-canaliculata_contig9905:2598..2909Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9905 2599..2909 +
1693495241.228421-UTR-P-canaliculata_contig9905:2598..29091693495241.228421-UTR-P-canaliculata_contig9905:2598..2909Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9905 2599..2909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9905.24021.1prot_P-canaliculata_contig9905.24021.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9905 2197..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9905.24021.1

>prot_P-canaliculata_contig9905.24021.1 ID=prot_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=134bp
STAKPTPGRLGSSRPPPPTPNDCVAVEASFETASSAKSSAVRVAPLSKDS
FRTASHLRRCVTDRADCLESSPTPSGDGDDEPPCMESKNVGMTLWTSPFS
GDGCGTTADVSGSSISRCPSRHFATTEIFGPTS*
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mRNA from alignment at P-canaliculata_contig9905:2197..2909+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9905.24021.1 ID=mRNA_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=713bp|location=Sequence derived from alignment at P-canaliculata_contig9905:2197..2909+ (Pelvetia canaliculata dioecious)
TCCACCGCCAAGCCAACACCAGGTCGACTAGGCTCCTCGCGGCCACCACC
ACCGACGCCTAATGATTGCGTTGCTGTCGAAGCCTCCTTCGAAACGGCGT
CGTCGGCCAAATCGTCCGCAGTACGCGTCGCCCCGCTTTCAAAAGACAGC
TTTCGCACGGCCAGCCACCTTAGGCGATGCGTCACAGACCGCGCTGACTG
CCTCGAGTCGTCTCCCACCCCGAGCGGGGACGGTGACGACGAACCCCCGT
GTATGGAGTCAAAGAACGTCGGCATGACGCTGTGGACTTCCCCGTTCAGC
GGCGACGGCTGCGGCACAACCGCAGACGTTTCAGGATCGTCCATCTCCAG
GTGCCCCTCCAGGCACTTCGCAACCACAGAGATTTTCGGTCCGACGTCAT
GAGCTGCGCCGCGGGAAACTGAGGCCTCCGACGGTGCGGTCGTCAGCTGC
GACGAGCTTGCACGGATTGCGATACGCGGGATAGTCACCCGAACCAGGTA
GGCGTAAGCCCTTGGTTCCTTGAGGTACCCTCGGCTGCTGCTGCTGCTAC
CAATGCTGTCGGCGCCGGCATCGACCCGTGCATCTTCACCGTCCACTACA
CTGCTACAGGTGGGCGAGTCTTCCACTGTCGACGACGACGAATGCGCACT
CCAGTCCCTCCGCCGCGAGCCCCAGCCGTCGCCACCATCGTCGGCGGCTC
GGGCAGGCCCGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9905:2197..2909+

>mRNA_P-canaliculata_contig9905.24021.1 ID=mRNA_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig9905:2197..2909+ (Pelvetia canaliculata dioecious)
TCCACCGCCAAGCCAACACCAGGTCGACTAGGCTCCTCGCGGCCACCACC
ACCGACGCCTAATGATTGCGTTGCTGTCGAAGCCTCCTTCGAAACGGCGT
CGTCGGCCAAATCGTCCGCAGTACGCGTCGCCCCGCTTTCAAAAGACAGC
TTTCGCACGGCCAGCCACCTTAGGCGATGCGTCACAGACCGCGCTGACTG
CCTCGAGTCGTCTCCCACCCCGAGCGGGGACGGTGACGACGAACCCCCGT
GTATGGAGTCAAAGAACGTCGGCATGACGCTGTGGACTTCCCCGTTCAGC
GGCGACGGCTGCGGCACAACCGCAGACGTTTCAGGATCGTCCATCTCCAG
GTGCCCCTCCAGGCACTTCGCAACCACAGAGATTTTCGGTCCGACGTCAT
GATCCACCGCCAAGCCAACACCAGGTCGACTAGGCTCCTCGCGGCCACCA
CCACCGACGCCTAATGATTGCGTTGCTGTCGAAGCCTCCTTCGAAACGGC
GTCGTCGGCCAAATCGTCCGCAGTACGCGTCGCCCCGCTTTCAAAAGACA
GCTTTCGCACGGCCAGCCACCTTAGGCGATGCGTCACAGACCGCGCTGAC
TGCCTCGAGTCGTCTCCCACCCCGAGCGGGGACGGTGACGACGAACCCCC
GTGTATGGAGTCAAAGAACGTCGGCATGACGCTGTGGACTTCCCCGTTCA
GCGGCGACGGCTGCGGCACAACCGCAGACGTTTCAGGATCGTCCATCTCC
AGGTGCCCCTCCAGGCACTTCGCAACCACAGAGATTTTCGGTCCGACGTC
ATGA
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