Homology
BLAST of mRNA_P-canaliculata_contig9905.24021.1 vs. uniprot
Match:
D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)
HSP 1 Score: 59.7 bits (143), Expect = 1.310e-6
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = -1
Query: 123 AYAYLVRVTIPRIAIRASSSQLTTAPSEASVSRGAAHDVGPKISVVAKCLEGHLEMDDPETSAVVPQPSPLNGEVHSVMPTFFDSIHGGSSSPSPLGVG-DDSRQSA--RSVTHRLRWLAVRKLSFESGATR 509
A A ++R+T+PR+ IRA S+ + A + S A G ++V A+ +EGH E++DP T +VP P PLG DS A R THRLRWLA+RK +F +G +R
Sbjct: 683 AAATIIRLTVPRVGIRACSTAVALAAAPPSSREVAGTSGGASVTVSAESVEGHFEVEDPGT--MVPPPXXXG----------------------PLGQEPQDSTAVATPRRETHRLRWLAIRKATFVTGGSR 790
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9905.24021.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.31e-6 / Id = 34.85 Sequence D7G7K0_ECTSI
Match Name E-value Identity Description
D7G7K0_ECTSI 1.310e-6 34.85 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 715 Cds size 402 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817351.8797092-CDS-P-canaliculata_contig9905:2196..2598 1622817351.8797092-CDS-P-canaliculata_contig9905:2196..2598 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9905 2197..2598 + 1693495241.2177553-CDS-P-canaliculata_contig9905:2196..2598 1693495241.2177553-CDS-P-canaliculata_contig9905:2196..2598 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9905 2197..2598 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817351.8909218-UTR-P-canaliculata_contig9905:2598..2909 1622817351.8909218-UTR-P-canaliculata_contig9905:2598..2909 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9905 2599..2909 + 1693495241.228421-UTR-P-canaliculata_contig9905:2598..2909 1693495241.228421-UTR-P-canaliculata_contig9905:2598..2909 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9905 2599..2909 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9905.24021.1
>prot_P-canaliculata_contig9905.24021.1 ID=prot_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=134bp
STAKPTPGRLGSSRPPPPTPNDCVAVEASFETASSAKSSAVRVAPLSKDS back to top mRNA from alignment at P-canaliculata_contig9905:2197..2909+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9905.24021.1 ID=mRNA_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=713bp|location=Sequence derived from alignment at P-canaliculata_contig9905:2197..2909+ (Pelvetia canaliculata dioecious)TCCACCGCCAAGCCAACACCAGGTCGACTAGGCTCCTCGCGGCCACCACC
ACCGACGCCTAATGATTGCGTTGCTGTCGAAGCCTCCTTCGAAACGGCGT
CGTCGGCCAAATCGTCCGCAGTACGCGTCGCCCCGCTTTCAAAAGACAGC
TTTCGCACGGCCAGCCACCTTAGGCGATGCGTCACAGACCGCGCTGACTG
CCTCGAGTCGTCTCCCACCCCGAGCGGGGACGGTGACGACGAACCCCCGT
GTATGGAGTCAAAGAACGTCGGCATGACGCTGTGGACTTCCCCGTTCAGC
GGCGACGGCTGCGGCACAACCGCAGACGTTTCAGGATCGTCCATCTCCAG
GTGCCCCTCCAGGCACTTCGCAACCACAGAGATTTTCGGTCCGACGTCAT
GA GCTGCGCCGCGGGAAACTGAGGCCTCCGACGGTGCGGTCGTCAGCTGC
GACGAGCTTGCACGGATTGCGATACGCGGGATAGTCACCCGAACCAGGTA
GGCGTAAGCCCTTGGTTCCTTGAGGTACCCTCGGCTGCTGCTGCTGCTAC
CAATGCTGTCGGCGCCGGCATCGACCCGTGCATCTTCACCGTCCACTACA
CTGCTACAGGTGGGCGAGTCTTCCACTGTCGACGACGACGAATGCGCACT
CCAGTCCCTCCGCCGCGAGCCCCAGCCGTCGCCACCATCGTCGGCGGCTC
GGGCAGGCCCGGG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9905:2197..2909+
>mRNA_P-canaliculata_contig9905.24021.1 ID=mRNA_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig9905:2197..2909+ (Pelvetia canaliculata dioecious) back to top