mRNA_P-canaliculata_contig9905.24021.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9905.24021.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.310e-6 Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = -1 Query: 123 AYAYLVRVTIPRIAIRASSSQLTTAPSEASVSRGAAHDVGPKISVVAKCLEGHLEMDDPETSAVVPQPSPLNGEVHSVMPTFFDSIHGGSSSPSPLGVG-DDSRQSA--RSVTHRLRWLAVRKLSFESGATR 509
A A ++R+T+PR+ IRA S+ + A + S A G ++V A+ +EGH E++DP T +VP P PLG DS A R THRLRWLA+RK +F +G +R
Sbjct: 683 AAATIIRLTVPRVGIRACSTAVALAAAPPSSREVAGTSGGASVTVSAESVEGHFEVEDPGT--MVPPPXXXG----------------------PLGQEPQDSTAVATPRRETHRLRWLAIRKATFVTGGSR 790 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9905.24021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9905.24021.1 >prot_P-canaliculata_contig9905.24021.1 ID=prot_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=134bp STAKPTPGRLGSSRPPPPTPNDCVAVEASFETASSAKSSAVRVAPLSKDSback to top mRNA from alignment at P-canaliculata_contig9905:2197..2909+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9905.24021.1 ID=mRNA_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=713bp|location=Sequence derived from alignment at P-canaliculata_contig9905:2197..2909+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9905:2197..2909+ >mRNA_P-canaliculata_contig9905.24021.1 ID=mRNA_P-canaliculata_contig9905.24021.1|Name=mRNA_P-canaliculata_contig9905.24021.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig9905:2197..2909+ (Pelvetia canaliculata dioecious)back to top |