Homology
BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Match:
W0JAI8_9BACT (Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 TaxID=794903 RepID=W0JAI8_9BACT)
HSP 1 Score: 54.7 bits (130), Expect = 1.900e-5
Identity = 65/216 (30.09%), Postives = 92/216 (42.59%), Query Frame = 1
Query: 1 FGTQTLAALGDSISVTFDVAYVGLDDPENQA----FRYGLGGDADTTNGFQFYVVQAANGTATEGQVARDPGNDTSQLGGGGQVFLANQNN-ADPAGSFAIQGTDVNTVTLTLERITIDDIDRINFTTSISVDGAEIASITRDE-----TLNRAGDSQFVFDTLAIGKGGSGDNYLVDNIVVTSNIAPIPEPGTLALTAFGAAALL------RRRR 600
F TL+++GD ISV+FDV + G+ D Q F G DA+ G V G A GQ F ++ A +G+ + G+ T T+ T ++ FT +++ G E+A+I D TL DTL + GG DNI VT+N +P+PEP T+A+ GAA L RRRR
Sbjct: 107 FDAVTLSSVGDFISVSFDV-FSGVTDGTKQLQVGFFDLGTKLDANLLPGDD--PVAGKTGYAY------------------GQGFTTDRGTYALKSGASNVTGSTGGTGTIEGALFTASADHKLTFTLTMTAAGLELATIFDDRSMSSYTLESLAGGSITVDTLWLLTGGVASTVNFDNITVTTNTSPVPEPATVAMF-LGAAVLATAFIASRRRR 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.90e-5 / Id = 30.09 Sequence W0JAI8_9BACT
Match Name E-value Identity Description
W0JAI8_9BACT 1.900e-5 30.09 Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 600 Cds size 600 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815597.1399682-CDS-P-canaliculata_contig102336:312..912 1622815597.1399682-CDS-P-canaliculata_contig102336:312..912 Pelvetia canaliculata dioecious CDS P-canaliculata_contig102336 313..912 + 1693494157.520358-CDS-P-canaliculata_contig102336:312..912 1693494157.520358-CDS-P-canaliculata_contig102336:312..912 Pelvetia canaliculata dioecious CDS P-canaliculata_contig102336 313..912 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102336.369.1
>prot_P-canaliculata_contig102336.369.1 ID=prot_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=200bp
FGTQTLAALGDSISVTFDVAYVGLDDPENQAFRYGLGGDADTTNGFQFYV back to top mRNA from alignment at P-canaliculata_contig102336:313..912+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102336.369.1 ID=mRNA_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig102336:313..912+ (Pelvetia canaliculata dioecious)TTCGGCACCCAGACCCTGGCCGCCTTGGGCGACTCCATTTCGGTGACCTT
CGACGTTGCGTACGTGGGCTTGGATGATCCGGAAAACCAGGCGTTCCGCT
ACGGGCTCGGCGGCGATGCGGATACCACCAATGGCTTCCAGTTCTACGTC
GTTCAGGCTGCGAACGGCACAGCGACTGAGGGTCAAGTGGCGAGAGACCC
CGGCAACGACACCAGCCAGCTCGGTGGTGGTGGTCAGGTCTTCCTGGCGA
ATCAGAACAACGCAGACCCGGCCGGGTCGTTTGCCATCCAGGGCACAGAC
GTGAACACCGTGACGTTGACGCTCGAACGCATTACGATTGATGACATTGA
CCGCATCAACTTCACGACCAGCATCAGTGTCGACGGTGCCGAGATCGCCA
GCATCACAAGGGACGAGACCCTGAACCGCGCCGGCGACTCGCAGTTTGTC
TTTGACACGCTGGCCATCGGCAAGGGCGGCTCCGGCGACAACTACCTGGT
CGACAACATCGTTGTCACCTCGAACATTGCCCCGATCCCCGAGCCGGGCA
CGCTCGCGCTGACGGCCTTCGGTGCCGCCGCGCTGCTCCGCCGCCGTCGG
back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102336:313..912+
>mRNA_P-canaliculata_contig102336.369.1 ID=mRNA_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at P-canaliculata_contig102336:313..912+ (Pelvetia canaliculata dioecious) back to top