prot_P-canaliculata_contig102336.369.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig102336.369.1
Unique Name	prot_P-canaliculata_contig102336.369.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	200

Homology

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BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Match: W0JAI8_9BACT (Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 TaxID=794903 RepID=W0JAI8_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-5
Identity = 65/216 (30.09%), Postives = 92/216 (42.59%), Query Frame = 0

Query:    1 FGTQTLAALGDSISVTFDVAYVGLDDPENQA----FRYGLGGDADTTNGFQFYVVQAANGTATEGQVARDPGNDTSQLGGGGQVFLANQNN-ADPAGSFAIQGTDVNTVTLTLERITIDDIDRINFTTSISVDGAEIASITRDE-----TLNRAGDSQFVFDTLAIGKGGSGDNYLVDNIVVTSNIAPIPEPGTLALTAFGAAALL------RRRR 200
            F   TL+++GD ISV+FDV + G+ D   Q     F  G   DA+   G     V    G A                   GQ F  ++   A  +G+  + G+   T T+     T     ++ FT +++  G E+A+I  D      TL          DTL +  GG       DNI VT+N +P+PEP T+A+   GAA L       RRRR
Sbjct:  107 FDAVTLSSVGDFISVSFDV-FSGVTDGTKQLQVGFFDLGTKLDANLLPGDD--PVAGKTGYAY------------------GQGFTTDRGTYALKSGASNVTGSTGGTGTIEGALFTASADHKLTFTLTMTAAGLELATIFDDRSMSSYTLESLAGGSITVDTLWLLTGGVASTVNFDNITVTTNTSPVPEPATVAMF-LGAAVLATAFIASRRRR 300

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
W0JAI8_9BACT	1.900e-5	30.09	Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013424	PEP-CTERM protein-sorting domain	PFAM	PF07589	PEP-CTERM	coord: 178..200 e-value: 1.6E-4 score: 21.6
IPR013424	PEP-CTERM protein-sorting domain	TIGRFAM	TIGR02595	TIGR02595	coord: 179..200 e-value: 9.4E-5 score: 21.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig102336	contig	P-canaliculata_contig102336:313..912 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig102336.369.1	mRNA_P-canaliculata_contig102336.369.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig102336 313..912 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig102336.369.1 ID=prot_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=200bp
FGTQTLAALGDSISVTFDVAYVGLDDPENQAFRYGLGGDADTTNGFQFYV
VQAANGTATEGQVARDPGNDTSQLGGGGQVFLANQNNADPAGSFAIQGTD
VNTVTLTLERITIDDIDRINFTTSISVDGAEIASITRDETLNRAGDSQFV
FDTLAIGKGGSGDNYLVDNIVVTSNIAPIPEPGTLALTAFGAAALLRRRR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013424	PEP_exosort_dom