mRNA_P-canaliculata_contig102336.369.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102336.369.1
Unique NamemRNA_P-canaliculata_contig102336.369.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Match: W0JAI8_9BACT (Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 TaxID=794903 RepID=W0JAI8_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-5
Identity = 65/216 (30.09%), Postives = 92/216 (42.59%), Query Frame = 1 
Query:    1 FGTQTLAALGDSISVTFDVAYVGLDDPENQA----FRYGLGGDADTTNGFQFYVVQAANGTATEGQVARDPGNDTSQLGGGGQVFLANQNN-ADPAGSFAIQGTDVNTVTLTLERITIDDIDRINFTTSISVDGAEIASITRDE-----TLNRAGDSQFVFDTLAIGKGGSGDNYLVDNIVVTSNIAPIPEPGTLALTAFGAAALL------RRRR 600
            F   TL+++GD ISV+FDV + G+ D   Q     F  G   DA+   G     V    G A                   GQ F  ++   A  +G+  + G+   T T+     T     ++ FT +++  G E+A+I  D      TL          DTL +  GG       DNI VT+N +P+PEP T+A+   GAA L       RRRR
Sbjct:  107 FDAVTLSSVGDFISVSFDV-FSGVTDGTKQLQVGFFDLGTKLDANLLPGDD--PVAGKTGYAY------------------GQGFTTDRGTYALKSGASNVTGSTGGTGTIEGALFTASADHKLTFTLTMTAAGLELATIFDDRSMSSYTLESLAGGSITVDTLWLLTGGVASTVNFDNITVTTNTSPVPEPATVAMF-LGAAVLATAFIASRRRR 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W0JAI8_9BACT1.900e-530.09Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102336contigP-canaliculata_contig102336:313..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.1399682-CDS-P-canaliculata_contig102336:312..9121622815597.1399682-CDS-P-canaliculata_contig102336:312..912Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102336 313..912 +
1693494157.520358-CDS-P-canaliculata_contig102336:312..9121693494157.520358-CDS-P-canaliculata_contig102336:312..912Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102336 313..912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102336.369.1prot_P-canaliculata_contig102336.369.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102336 313..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102336.369.1

>prot_P-canaliculata_contig102336.369.1 ID=prot_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=200bp
FGTQTLAALGDSISVTFDVAYVGLDDPENQAFRYGLGGDADTTNGFQFYV
VQAANGTATEGQVARDPGNDTSQLGGGGQVFLANQNNADPAGSFAIQGTD
VNTVTLTLERITIDDIDRINFTTSISVDGAEIASITRDETLNRAGDSQFV
FDTLAIGKGGSGDNYLVDNIVVTSNIAPIPEPGTLALTAFGAAALLRRRR
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mRNA from alignment at P-canaliculata_contig102336:313..912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102336.369.1 ID=mRNA_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig102336:313..912+ (Pelvetia canaliculata dioecious)
TTCGGCACCCAGACCCTGGCCGCCTTGGGCGACTCCATTTCGGTGACCTT
CGACGTTGCGTACGTGGGCTTGGATGATCCGGAAAACCAGGCGTTCCGCT
ACGGGCTCGGCGGCGATGCGGATACCACCAATGGCTTCCAGTTCTACGTC
GTTCAGGCTGCGAACGGCACAGCGACTGAGGGTCAAGTGGCGAGAGACCC
CGGCAACGACACCAGCCAGCTCGGTGGTGGTGGTCAGGTCTTCCTGGCGA
ATCAGAACAACGCAGACCCGGCCGGGTCGTTTGCCATCCAGGGCACAGAC
GTGAACACCGTGACGTTGACGCTCGAACGCATTACGATTGATGACATTGA
CCGCATCAACTTCACGACCAGCATCAGTGTCGACGGTGCCGAGATCGCCA
GCATCACAAGGGACGAGACCCTGAACCGCGCCGGCGACTCGCAGTTTGTC
TTTGACACGCTGGCCATCGGCAAGGGCGGCTCCGGCGACAACTACCTGGT
CGACAACATCGTTGTCACCTCGAACATTGCCCCGATCCCCGAGCCGGGCA
CGCTCGCGCTGACGGCCTTCGGTGCCGCCGCGCTGCTCCGCCGCCGTCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102336:313..912+

>mRNA_P-canaliculata_contig102336.369.1 ID=mRNA_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at P-canaliculata_contig102336:313..912+ (Pelvetia canaliculata dioecious)
TTCGGCACCCAGACCCTGGCCGCCTTGGGCGACTCCATTTCGGTGACCTT
CGACGTTGCGTACGTGGGCTTGGATGATCCGGAAAACCAGGCGTTCCGCT
ACGGGCTCGGCGGCGATGCGGATACCACCAATGGCTTCCAGTTCTACGTC
GTTCAGGCTGCGAACGGCACAGCGACTGAGGGTCAAGTGGCGAGAGACCC
CGGCAACGACACCAGCCAGCTCGGTGGTGGTGGTCAGGTCTTCCTGGCGA
ATCAGAACAACGCAGACCCGGCCGGGTCGTTTGCCATCCAGGGCACAGAC
GTGAACACCGTGACGTTGACGCTCGAACGCATTACGATTGATGACATTGA
CCGCATCAACTTCACGACCAGCATCAGTGTCGACGGTGCCGAGATCGCCA
GCATCACAAGGGACGAGACCCTGAACCGCGCCGGCGACTCGCAGTTTGTC
TTTGACACGCTGGCCATCGGCAAGGGCGGCTCCGGCGACAACTACCTGGT
CGACAACATCGTTGTCACCTCGAACATTGCCCCGATCCCCGAGCCGGGCA
CGCTCGCGCTGACGGCCTTCGGTGCCGCCGCGCTGCTCCGCCGCCGTCGG
TTCGGCACCCAGACCCTGGCCGCCTTGGGCGACTCCATTTCGGTGACCTT
CGACGTTGCGTACGTGGGCTTGGATGATCCGGAAAACCAGGCGTTCCGCT
ACGGGCTCGGCGGCGATGCGGATACCACCAATGGCTTCCAGTTCTACGTC
GTTCAGGCTGCGAACGGCACAGCGACTGAGGGTCAAGTGGCGAGAGACCC
CGGCAACGACACCAGCCAGCTCGGTGGTGGTGGTCAGGTCTTCCTGGCGA
ATCAGAACAACGCAGACCCGGCCGGGTCGTTTGCCATCCAGGGCACAGAC
GTGAACACCGTGACGTTGACGCTCGAACGCATTACGATTGATGACATTGA
CCGCATCAACTTCACGACCAGCATCAGTGTCGACGGTGCCGAGATCGCCA
GCATCACAAGGGACGAGACCCTGAACCGCGCCGGCGACTCGCAGTTTGTC
TTTGACACGCTGGCCATCGGCAAGGGCGGCTCCGGCGACAACTACCTGGT
CGACAACATCGTTGTCACCTCGAACATTGCCCCGATCCCCGAGCCGGGCA
CGCTCGCGCTGACGGCCTTCGGTGCCGCCGCGCTGCTCCGCCGCCGTCGG
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