mRNA_P-canaliculata_contig102336.369.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Match: W0JAI8_9BACT (Anchor protein n=1 Tax=Opitutaceae bacterium TAV5 TaxID=794903 RepID=W0JAI8_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 1.900e-5 Identity = 65/216 (30.09%), Postives = 92/216 (42.59%), Query Frame = 1 Query: 1 FGTQTLAALGDSISVTFDVAYVGLDDPENQA----FRYGLGGDADTTNGFQFYVVQAANGTATEGQVARDPGNDTSQLGGGGQVFLANQNN-ADPAGSFAIQGTDVNTVTLTLERITIDDIDRINFTTSISVDGAEIASITRDE-----TLNRAGDSQFVFDTLAIGKGGSGDNYLVDNIVVTSNIAPIPEPGTLALTAFGAAALL------RRRR 600
F TL+++GD ISV+FDV + G+ D Q F G DA+ G V G A GQ F ++ A +G+ + G+ T T+ T ++ FT +++ G E+A+I D TL DTL + GG DNI VT+N +P+PEP T+A+ GAA L RRRR
Sbjct: 107 FDAVTLSSVGDFISVSFDV-FSGVTDGTKQLQVGFFDLGTKLDANLLPGDD--PVAGKTGYAY------------------GQGFTTDRGTYALKSGASNVTGSTGGTGTIEGALFTASADHKLTFTLTMTAAGLELATIFDDRSMSSYTLESLAGGSITVDTLWLLTGGVASTVNFDNITVTTNTSPVPEPATVAMF-LGAAVLATAFIASRRRR 300 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102336.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102336.369.1 >prot_P-canaliculata_contig102336.369.1 ID=prot_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=200bp FGTQTLAALGDSISVTFDVAYVGLDDPENQAFRYGLGGDADTTNGFQFYVback to top mRNA from alignment at P-canaliculata_contig102336:313..912+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102336.369.1 ID=mRNA_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig102336:313..912+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102336:313..912+ >mRNA_P-canaliculata_contig102336.369.1 ID=mRNA_P-canaliculata_contig102336.369.1|Name=mRNA_P-canaliculata_contig102336.369.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at P-canaliculata_contig102336:313..912+ (Pelvetia canaliculata dioecious)back to top |