Homology
BLAST of mRNA_P-canaliculata_contig101824.269.1 vs. uniprot
Match: A0A6A6PIS3_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PIS3_9PEZI) HSP 1 Score: 53.9 bits (128), Expect = 1.360e-5 Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 Query: 277 RRALRRTCPAEGEENAVDGDVGALERDGRTWVARRAGPGGLDTTPPREGRFER 435
RR R E EN ++G + LE D R W+ RR GGL++TPPREGRFER
Sbjct: 798 RRPTHRQARHEEVENELEGHLDGLEEDRRLWMDRREVGGGLESTPPREGRFER 850
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 435 |
| Cds size | 435 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815590.5669222-CDS-P-canaliculata_contig101824:0..126 | 1622815590.5669222-CDS-P-canaliculata_contig101824:0..126 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101824 1..126 - |
| 1693494154.1358082-CDS-P-canaliculata_contig101824:0..126 | 1693494154.1358082-CDS-P-canaliculata_contig101824:0..126 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101824 1..126 - |
| 1622815590.5814862-CDS-P-canaliculata_contig101824:246..555 | 1622815590.5814862-CDS-P-canaliculata_contig101824:246..555 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101824 247..555 - |
| 1693494154.1436157-CDS-P-canaliculata_contig101824:246..555 | 1693494154.1436157-CDS-P-canaliculata_contig101824:246..555 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101824 247..555 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101824.269.1 >prot_P-canaliculata_contig101824.269.1 ID=prot_P-canaliculata_contig101824.269.1|Name=mRNA_P-canaliculata_contig101824.269.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=145bp
PAAPAAPPPSRPRAPSSPGAPPIKRKPVPPPPSSPPLCVYHDARPRTSVD
ADARASGRRRGTGVGGEVEVEVGLRSSPPEVPVVVGVAAVPPRRALRRTC
PAEGEENAVDGDVGALERDGRTWVARRAGPGGLDTTPPREGRFER back to topmRNA from alignment at P-canaliculata_contig101824:1..555- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig101824.269.1 ID=mRNA_P-canaliculata_contig101824.269.1|Name=mRNA_P-canaliculata_contig101824.269.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at P-canaliculata_contig101824:1..555- (Pelvetia canaliculata dioecious)
CCGGCCGCGCCGGCCGCGCCACCACCCTCCCGCCCCCGCGCCCCGTCCTC
CCCGGGCGCCCCGCCCATCAAGCGCAAGCCCGTCCCCCCGCCGCCGTCGT
CCCCGCCCCTGTGCGTCTATCATGACGCGCGGCCGCGGACGTCCGTCGAC
GCGGATGCGCGCGCGAGCGGGAGGAGGAGGGGCACGGGCGTGGGTGGGGA
GGTGGAGGTGGAGGTGGGGCTGCGCTCCTCGCCGCCCGAAGTCCCCGTCG
TCGTCGGCGTCGCCGCCGTGCCGCCGCGGCGTGCGCTGCGCCGTACGTGT
CCGGCGGAGGTGGGGGCGCTGCCGGCGCTGCACGGCGACGCGCACGCGGT
GTACCGCGACGTCGCGCGCGAGCCTTCTGTGCGCGGGGTGGGGACGGGCA
CGCGTGCGTCTGCCCTCGCAGCGCACGAGGGCGAAGAAAACGCCGTGGAC
GGCGACGTGGGCGCGCTCGAGCGTGATGGTCGCACGTGGGTCGCGCGCAG
GGCGGGCCCGGGCGGGTTGGACACGACGCCGCCGCGGGAGGGGAGGTTTG
AGAGG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig101824:1..555- >mRNA_P-canaliculata_contig101824.269.1 ID=mRNA_P-canaliculata_contig101824.269.1|Name=mRNA_P-canaliculata_contig101824.269.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at P-canaliculata_contig101824:1..555- (Pelvetia canaliculata dioecious)
CCGGCCGCGCCGGCCGCGCCACCACCCTCCCGCCCCCGCGCCCCGTCCTC
CCCGGGCGCCCCGCCCATCAAGCGCAAGCCCGTCCCCCCGCCGCCGTCGT
CCCCGCCCCTGTGCGTCTATCATGACGCGCGGCCGCGGACGTCCGTCGAC
GCGGATGCGCGCGCGAGCGGGAGGAGGAGGGGCACGGGCGTGGGTGGGGA
GGTGGAGGTGGAGGTGGGGCTGCGCTCCTCGCCGCCCGAAGTCCCCGTCG
TCGTCGGCGTCGCCGCCGTGCCGCCGCGGCGTGCGCTGCGCCGTACGTGT
CCGGCGGAGCCGGCCGCGCCGGCCGCGCCACCACCCTCCCGCCCCCGCGC
CCCGTCCTCCCCGGGCGCCCCGCCCATCAAGCGCAAGCCCGTCCCCCCGC
CGCCGTCGTCCCCGCCCCTGTGCGTCTATCATGACGCGCGGCCGCGGACG
TCCGTCGACGCGGATGCGCGCGCGAGCGGGAGGAGGAGGGGCACGGGCGT
GGGTGGGGAGGTGGAGGTGGAGGTGGGGCTGCGCTCCTCGCCGCCCGAAG
TCCCCGTCGTCGTCGGCGTCGCCGCCGTGCCGCCGCGGCGTGCGCTGCGC
CGTACGTGTCCGGCGGAGGGCGAAGAAAACGCCGTGGACGGCGACGTGGG
CGCGCTCGAGCGTGATGGTCGCACGTGGGTCGCGCGCAGGGCGGGCCCGG
GCGGGTTGGACACGACGCCGCCGCGGGAGGGGAGGTTTGAGAGGGGCGAA
GAAAACGCCGTGGACGGCGACGTGGGCGCGCTCGAGCGTGATGGTCGCAC
GTGGGTCGCGCGCAGGGCGGGCCCGGGCGGGTTGGACACGACGCCGCCGC
GGGAGGGGAGGTTTGAGAGG back to top
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