mRNA_P-canaliculata_contig101824.269.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101824.269.1
Unique NamemRNA_P-canaliculata_contig101824.269.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig101824.269.1 vs. uniprot
Match: A0A6A6PIS3_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PIS3_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 1.360e-5
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:  277 RRALRRTCPAEGEENAVDGDVGALERDGRTWVARRAGPGGLDTTPPREGRFER 435
            RR   R    E  EN ++G +  LE D R W+ RR   GGL++TPPREGRFER
Sbjct:  798 RRPTHRQARHEEVENELEGHLDGLEEDRRLWMDRREVGGGLESTPPREGRFER 850
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101824.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A6PIS3_9PEZI1.360e-550.94Uncharacterized protein n=1 Tax=Neohortaea acidoph... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101824contigP-canaliculata_contig101824:1..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.5669222-CDS-P-canaliculata_contig101824:0..1261622815590.5669222-CDS-P-canaliculata_contig101824:0..126Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101824 1..126 -
1693494154.1358082-CDS-P-canaliculata_contig101824:0..1261693494154.1358082-CDS-P-canaliculata_contig101824:0..126Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101824 1..126 -
1622815590.5814862-CDS-P-canaliculata_contig101824:246..5551622815590.5814862-CDS-P-canaliculata_contig101824:246..555Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101824 247..555 -
1693494154.1436157-CDS-P-canaliculata_contig101824:246..5551693494154.1436157-CDS-P-canaliculata_contig101824:246..555Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101824 247..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101824.269.1prot_P-canaliculata_contig101824.269.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101824 1..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101824.269.1

>prot_P-canaliculata_contig101824.269.1 ID=prot_P-canaliculata_contig101824.269.1|Name=mRNA_P-canaliculata_contig101824.269.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=145bp
PAAPAAPPPSRPRAPSSPGAPPIKRKPVPPPPSSPPLCVYHDARPRTSVD
ADARASGRRRGTGVGGEVEVEVGLRSSPPEVPVVVGVAAVPPRRALRRTC
PAEGEENAVDGDVGALERDGRTWVARRAGPGGLDTTPPREGRFER
back to top

mRNA from alignment at P-canaliculata_contig101824:1..555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101824.269.1 ID=mRNA_P-canaliculata_contig101824.269.1|Name=mRNA_P-canaliculata_contig101824.269.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at P-canaliculata_contig101824:1..555- (Pelvetia canaliculata dioecious)
CCGGCCGCGCCGGCCGCGCCACCACCCTCCCGCCCCCGCGCCCCGTCCTC
CCCGGGCGCCCCGCCCATCAAGCGCAAGCCCGTCCCCCCGCCGCCGTCGT
CCCCGCCCCTGTGCGTCTATCATGACGCGCGGCCGCGGACGTCCGTCGAC
GCGGATGCGCGCGCGAGCGGGAGGAGGAGGGGCACGGGCGTGGGTGGGGA
GGTGGAGGTGGAGGTGGGGCTGCGCTCCTCGCCGCCCGAAGTCCCCGTCG
TCGTCGGCGTCGCCGCCGTGCCGCCGCGGCGTGCGCTGCGCCGTACGTGT
CCGGCGGAGGTGGGGGCGCTGCCGGCGCTGCACGGCGACGCGCACGCGGT
GTACCGCGACGTCGCGCGCGAGCCTTCTGTGCGCGGGGTGGGGACGGGCA
CGCGTGCGTCTGCCCTCGCAGCGCACGAGGGCGAAGAAAACGCCGTGGAC
GGCGACGTGGGCGCGCTCGAGCGTGATGGTCGCACGTGGGTCGCGCGCAG
GGCGGGCCCGGGCGGGTTGGACACGACGCCGCCGCGGGAGGGGAGGTTTG
AGAGG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig101824:1..555-

>mRNA_P-canaliculata_contig101824.269.1 ID=mRNA_P-canaliculata_contig101824.269.1|Name=mRNA_P-canaliculata_contig101824.269.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at P-canaliculata_contig101824:1..555- (Pelvetia canaliculata dioecious)
CCGGCCGCGCCGGCCGCGCCACCACCCTCCCGCCCCCGCGCCCCGTCCTC
CCCGGGCGCCCCGCCCATCAAGCGCAAGCCCGTCCCCCCGCCGCCGTCGT
CCCCGCCCCTGTGCGTCTATCATGACGCGCGGCCGCGGACGTCCGTCGAC
GCGGATGCGCGCGCGAGCGGGAGGAGGAGGGGCACGGGCGTGGGTGGGGA
GGTGGAGGTGGAGGTGGGGCTGCGCTCCTCGCCGCCCGAAGTCCCCGTCG
TCGTCGGCGTCGCCGCCGTGCCGCCGCGGCGTGCGCTGCGCCGTACGTGT
CCGGCGGAGCCGGCCGCGCCGGCCGCGCCACCACCCTCCCGCCCCCGCGC
CCCGTCCTCCCCGGGCGCCCCGCCCATCAAGCGCAAGCCCGTCCCCCCGC
CGCCGTCGTCCCCGCCCCTGTGCGTCTATCATGACGCGCGGCCGCGGACG
TCCGTCGACGCGGATGCGCGCGCGAGCGGGAGGAGGAGGGGCACGGGCGT
GGGTGGGGAGGTGGAGGTGGAGGTGGGGCTGCGCTCCTCGCCGCCCGAAG
TCCCCGTCGTCGTCGGCGTCGCCGCCGTGCCGCCGCGGCGTGCGCTGCGC
CGTACGTGTCCGGCGGAGGGCGAAGAAAACGCCGTGGACGGCGACGTGGG
CGCGCTCGAGCGTGATGGTCGCACGTGGGTCGCGCGCAGGGCGGGCCCGG
GCGGGTTGGACACGACGCCGCCGCGGGAGGGGAGGTTTGAGAGGGGCGAA
GAAAACGCCGTGGACGGCGACGTGGGCGCGCTCGAGCGTGATGGTCGCAC
GTGGGTCGCGCGCAGGGCGGGCCCGGGCGGGTTGGACACGACGCCGCCGC
GGGAGGGGAGGTTTGAGAGG
back to top