mRNA_P-canaliculata_contig101628.250.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101628.250.1
Unique NamemRNA_P-canaliculata_contig101628.250.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: A0A4Y7ZYW8_9GAMM (Small ribosomal subunit biogenesis GTPase RsgA n=6 Tax=Psychromonas TaxID=67572 RepID=A0A4Y7ZYW8_9GAMM)

HSP 1 Score: 601 bits (1549), Expect = 4.050e-216
Identity = 293/317 (92.43%), Postives = 306/317 (96.53%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QWDESELGP+LEGLVVSRFGQHADIED  GKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHI+IVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNK+DLL +E+A +I +ELQSYRDIGY V+YSSMHGDGLD+LKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFR +LG+CRFRDCKH ADPGCALV AVE+G ID+ARFNSFLRILETMDDAKNARHRDPN Y
Sbjct:   30 QWDESELGPQLEGLVVSRFGQHADIEDNDGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIIIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKIDLLDEESAKIIDEELQSYRDIGYQVLYSSMHGDGLDSLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFRNYLGSCRFRDCKHQADPGCALVAAVEDGHIDSARFNSFLRILETMDDAKNARHRDPNTY 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: UPI00037AC5C0 (small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=Psychromonas TaxID=67572 RepID=UPI00037AC5C0)

HSP 1 Score: 566 bits (1460), Expect = 1.470e-202
Identity = 271/317 (85.49%), Postives = 296/317 (93.38%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QWDESELGP+L+G+V+SRFGQHADIEDE+G +ERC LRR+++SLVTGDRVVWRAGKES+ GISGV+EAVHPRKTVLTRPDYYDGIKPIAANIDHI+IVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNK DLL D++A  + +ELQSYRDIGY V+YSSMHGDGLD+LK  MKDKINIFVGQSGVGKTSLLN LLPEVEAVTGEISEGSGLGKHTTTTARLYHF+DGGDLIDSPGIREFSLWHLEAERIASGFIEFR+HLG CRFRDCKH  DPGCALV  VE G+I  AR++SFLRILETMDDAKNAR+R+PN Y
Sbjct:   30 QWDESELGPQLQGIVISRFGQHADIEDEKGNIERCNLRRAVKSLVTGDRVVWRAGKESYHGISGVVEAVHPRKTVLTRPDYYDGIKPIAANIDHIIIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKSDLLDDQSAKFVDQELQSYRDIGYKVLYSSMHGDGLDDLKGAMKDKINIFVGQSGVGKTSLLNTLLPEVEAVTGEISEGSGLGKHTTTTARLYHFADGGDLIDSPGIREFSLWHLEAERIASGFIEFRKHLGGCRFRDCKHKNDPGCALVAGVEAGEIHPARYHSFLRILETMDDAKNARNRNPNTY 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: A0A2N1A4P9_9GAMM (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=Psychromonas TaxID=67572 RepID=A0A2N1A4P9_9GAMM)

HSP 1 Score: 562 bits (1449), Expect = 6.960e-201
Identity = 270/317 (85.17%), Postives = 293/317 (92.43%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            +WDE+ELGP+L+G+V+SRFGQHADIEDE G +ERC LRR+I+SLVTGD+VVWRAG ES+ GISGV+EAVHPR TVLTRPDYYDGIKPIAANIDHI+IVSSIAP+FSRNIIDRYLVACEDIGITPIIVLNK DLL D +   I  ELQSYRDIGY V+YSSMHGDGLDNLK+VMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHF +GGDLIDSPGIREFSLWHL AERIASGFIEFR++LG CRFRDCKH ADPGCALV AVE  +ID+AR+ SFLRILETMDDAKNARHRDPN Y
Sbjct:   30 EWDETELGPQLQGVVISRFGQHADIEDENGNIERCNLRRAIKSLVTGDKVVWRAGNESYHGISGVVEAVHPRTTVLTRPDYYDGIKPIAANIDHIIIVSSIAPDFSRNIIDRYLVACEDIGITPIIVLNKSDLLDDASREHIDNELQSYRDIGYNVLYSSMHGDGLDNLKAVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFPEGGDLIDSPGIREFSLWHLAAERIASGFIEFRDYLGECRFRDCKHKADPGCALVAAVEEKKIDDARYRSFLRILETMDDAKNARHRDPNTY 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: M4U557_9GAMM (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Psychromonas sp. CNPT3 TaxID=314282 RepID=M4U557_9GAMM)

HSP 1 Score: 553 bits (1425), Expect = 3.150e-197
Identity = 262/317 (82.65%), Postives = 292/317 (92.11%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QWDESELGPKL+G+V+SRFGQHADIEDE G +ERCTLRR++RSLVTGDRVVWRAG E++ GI+GV+EAVHPR +VLTRPDYYDGIKPIAANI  I+IVSS+APEFSRNIIDRY++ACEDIGITPII LNK DLL +  AA+I KELQSYRDIGY V+Y SMHGDGL++LK+VMKD+I+IFVGQSGVGKTSLLNMLLPEVEA TGEISEGSGLGKHTTTTARLYHF+DGGD+IDSPGIREFSLWHLE ERIASGF+EFRE+LG CRFRDCKH  DPGCALVEAV+ G+ID AR+ SFLRILETMDDAKNARHR PN Y
Sbjct:   30 QWDESELGPKLQGVVISRFGQHADIEDEHGNIERCTLRRAVRSLVTGDRVVWRAGNEAYHGITGVVEAVHPRDSVLTRPDYYDGIKPIAANIGQIIIVSSVAPEFSRNIIDRYIIACEDIGITPIIALNKSDLLDETNAAIIDKELQSYRDIGYHVLYCSMHGDGLESLKTVMKDEISIFVGQSGVGKTSLLNMLLPEVEATTGEISEGSGLGKHTTTTARLYHFADGGDIIDSPGIREFSLWHLEPERIASGFVEFREYLGECRFRDCKHKIDPGCALVEAVQAGKIDKARYASFLRILETMDDAKNARHRAPNTY 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: UPI001EE7D1C9 (small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Psychromonas antarctica TaxID=67573 RepID=UPI001EE7D1C9)

HSP 1 Score: 552 bits (1422), Expect = 9.020e-197
Identity = 265/317 (83.60%), Postives = 289/317 (91.17%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QW+ESELGP+L+G+V+SRFGQHADIEDE+G +ERC LRR I+SLVTGDRVVWRAG E++ GISGV+EAVHPR TVLTRPDYYDGIKPIAANIDHI+IVSSIAP+FSRNIIDRYLVACEDIGITPIIVLNK DLL  ++A +I KELQSYRDIGY V+YSSMHGDGL  LK VMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISE SGLGKHTTTTARLYHF +GGDLIDSPGIREFSLWHL A+RIA+GFIEFR  LG CRFRDCKH  DPGCAL EAV  G+ID AR++SFLRILETMDDAKNARHRDPN +
Sbjct:   30 QWEESELGPQLQGVVISRFGQHADIEDEKGNIERCNLRRGIKSLVTGDRVVWRAGNEAYHGISGVVEAVHPRSTVLTRPDYYDGIKPIAANIDHIIIVSSIAPDFSRNIIDRYLVACEDIGITPIIVLNKSDLLDKQSAVIIDKELQSYRDIGYQVLYSSMHGDGLSALKYVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEASGLGKHTTTTARLYHFPEGGDLIDSPGIREFSLWHLAADRIATGFIEFRPFLGECRFRDCKHKIDPGCALAEAVATGKIDRARYHSFLRILETMDDAKNARHRDPNTH 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: A1SZV8_PSYIN (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=Psychromonas TaxID=67572 RepID=A1SZV8_PSYIN)

HSP 1 Score: 551 bits (1420), Expect = 1.890e-196
Identity = 263/317 (82.97%), Postives = 287/317 (90.54%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QW+ESELGP+LEG+V+SRFGQHAD+EDE GK+ERC LRR ++SLVTGDRVVWRAG +++ GISGVIEAVHPR TVLTRPDYYDGIKPIAANIDHI+IVSSIAPEFSRNIIDRYL+ACEDIGITPIIVLNK DLL +++A  I +ELQSYRDIGY V+YSSMHGDGL  LKS MKDKINIFVGQSGVGKTSL+N+LLPE+EA T EISE SGLGKHTTTTARLYHF DGGDLIDSPGIREFSLWHLE ERIA+GFIEFR  LG CRFRDCKH  DPGCALV+AV  GQIDNAR+ SFLRILETMDDAKNARHR PN Y
Sbjct:   30 QWNESELGPQLEGIVISRFGQHADVEDEHGKIERCNLRRGVKSLVTGDRVVWRAGNQAYHGISGVIEAVHPRTTVLTRPDYYDGIKPIAANIDHIIIVSSIAPEFSRNIIDRYLIACEDIGITPIIVLNKSDLLNEQSAKSIDQELQSYRDIGYQVLYSSMHGDGLVGLKSAMKDKINIFVGQSGVGKTSLVNLLLPEIEAATAEISENSGLGKHTTTTARLYHFPDGGDLIDSPGIREFSLWHLEPERIATGFIEFRPFLGQCRFRDCKHQIDPGCALVKAVAEGQIDNARYRSFLRILETMDDAKNARHRPPNTY 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: A0A2N0X2S6_9GAMM (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Psychromonas sp. psych-6C06 TaxID=2058089 RepID=A0A2N0X2S6_9GAMM)

HSP 1 Score: 550 bits (1417), Expect = 5.210e-196
Identity = 265/317 (83.60%), Postives = 284/317 (89.59%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QWDESELG +LEG+V+SRFGQHADIEDE G VERC LRR+++SLVTGD+VVWRAG ESHQGISGV+EAVHPRKTVLTRPDYYDGIKPIAANIDHI+IVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNK DLL D +              GY V+YSSMHGDGLD+LKSVMKDK+NIFVGQSGVGKTSLLNMLLPEVEA+TGEISEGSGLGKHTTTTARLYHF DGGDLIDSPGIREFSLWHL  ERIASGFIEFREHLG CRFRDCKH  DPGCALV AVE G+ID AR++SF+RILETMDDAKNARHRDPN +
Sbjct:   30 QWDESELGAQLEGVVISRFGQHADIEDENGNVERCNLRRAVKSLVTGDKVVWRAGNESHQGISGVVEAVHPRKTVLTRPDYYDGIKPIAANIDHIIIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKSDLLDDSSXXXXXXXXXXXXXXGYNVLYSSMHGDGLDSLKSVMKDKVNIFVGQSGVGKTSLLNMLLPEVEAITGEISEGSGLGKHTTTTARLYHFPDGGDLIDSPGIREFSLWHLAPERIASGFIEFREHLGGCRFRDCKHKIDPGCALVAAVEAGKIDEARYHSFIRILETMDDAKNARHRDPNTH 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: A0A0P9CIX7_9GAMM (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=unclassified Psychromonas TaxID=2614957 RepID=A0A0P9CIX7_9GAMM)

HSP 1 Score: 545 bits (1405), Expect = 3.500e-194
Identity = 258/317 (81.39%), Postives = 287/317 (90.54%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARHRDPNVY 951
            QWDESELGP+L+G+V+SRFGQHADIED++G +ERC LRRSI+SLVTGD VVWRAG E++ GI+G++EAVHPRKTVLTRPDYYDGIKPIA+NID I+IVSSIAP+FSRNIIDRY++ACEDIGITPII LNK DL+ D  A +I KELQSYRDIGY V+Y SM GDGLD LKSVMKDK+NIFVGQSGVGKTSLL MLLPEVEA TGEISEGSGLGKHTTTTARLYHF DGGDLIDSPGIREFSLWHL+  RIA+GFIEFRE+LG CRFRDCKH  DPGC LVEAV+ G+ID AR+ SF+RILETMDDAKNARHRDPN Y
Sbjct:   30 QWDESELGPQLQGVVISRFGQHADIEDDKGNIERCNLRRSIKSLVTGDCVVWRAGNEAYHGITGIVEAVHPRKTVLTRPDYYDGIKPIASNIDQIIIVSSIAPKFSRNIIDRYIIACEDIGITPIIALNKSDLIDDNNADIIDKELQSYRDIGYQVLYCSMFGDGLDGLKSVMKDKVNIFVGQSGVGKTSLLIMLLPEVEATTGEISEGSGLGKHTTTTARLYHFPDGGDLIDSPGIREFSLWHLDPARIATGFIEFREYLGTCRFRDCKHKTDPGCTLVEAVQQGKIDKARYASFIRILETMDDAKNARHRDPNTY 346          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: A0A137SMI3_9GAMM (Small ribosomal subunit biogenesis GTPase RsgA n=12 Tax=Moritella TaxID=58050 RepID=A0A137SMI3_9GAMM)

HSP 1 Score: 431 bits (1109), Expect = 3.870e-149
Identity = 207/312 (66.35%), Postives = 248/312 (79.49%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIY-SSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNARH 933
            +WD+S LG K EG+++SRFGQHAD+EDE G + RC LRRSI SLVTGDRVVWR G E  QGISG+IEAVH R+TVLTRPD+YDGIKPIAANID IVIVSS+ PEFS NIIDRY+VA ED+ I P+I+LNK+DLL+      I ++LQ+YRDIGY V   SS  G GL  L+ ++KD   IFVGQSGVGK+SL+N L+PE+    G++SE SGLG HTTTTARLYHF  GGDLIDSPG+REFSLWH++ E IA+GFIEFR+ LG CRFRDCKH  DPGCAL +AV  G+I   RF++++RILETM D +  RH
Sbjct:   30 EWDDSLLGKKQEGVIISRFGQHADVEDEHGVIHRCNLRRSIASLVTGDRVVWRLGNEQLQGISGIIEAVHERRTVLTRPDFYDGIKPIAANIDQIVIVSSVVPEFSTNIIDRYIVAAEDVKIRPVILLNKIDLLSPNELFTINQQLQTYRDIGYEVWQVSSTEGKGLGELQGLLKDNTTIFVGQSGVGKSSLVNALMPELHIQVGDVSEKSGLGTHTTTTARLYHFPSGGDLIDSPGVREFSLWHMKPEEIANGFIEFRDFLGECRFRDCKHKNDPGCALQDAVAKGKIKRVRFDNYVRILETMLDNRPERH 341          
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Match: UPI001E38566D (small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Motilimonas cestriensis TaxID=2742685 RepID=UPI001E38566D)

HSP 1 Score: 426 bits (1095), Expect = 5.390e-147
Identity = 205/311 (65.92%), Postives = 247/311 (79.42%), Query Frame = 1
Query:    1 QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRVVWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSSIAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYRDIGYTVIYSSMHG-DGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVEAVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERIASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRILETMDDAKNAR 930
            Q DES LG  ++G+VVSRFGQHADIEDE G ++RC LRRSI+SLVTGD+VVWR G E HQG++G+IEAVHPR+TVLTRPD YDGIK IAANID I+IVS++ PEFS NIIDRYLVACE+ GI P+I+LNKVDLL  +  A + K LQ YRD+GY V  SS H   GLDN++ ++KDK  IFVGQSGVGK+SL+N L+PEV A  G++SE SGLG+HTTTTARLYHF  GGDLIDSPGIREF+LWHLE ++I  GF+E R   G C+FRDCKH  DPGCA+V A E+G+I   R+ S+LRI + M + K  R
Sbjct:   30 QLDESLLGQPIQGVVVSRFGQHADIEDEHGNIQRCNLRRSIKSLVTGDKVVWRPGNEQHQGLNGIIEAVHPRETVLTRPDVYDGIKAIAANIDQIIIVSAVLPEFSTNIIDRYLVACEETGIEPVILLNKVDLLDADAFAELDKTLQIYRDLGYDVFLSSAHEKSGLDNIQGLLKDKTTIFVGQSGVGKSSLVNALMPEVAATIGDVSENSGLGQHTTTTARLYHFPSGGDLIDSPGIREFALWHLEPQQIFDGFVELRALNGLCKFRDCKHKTDPGCAVVAAAESGKIHPMRYQSYLRITDAMAENKPTR 340          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101628.250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y7ZYW8_9GAMM4.050e-21692.43Small ribosomal subunit biogenesis GTPase RsgA n=6... [more]
UPI00037AC5C01.470e-20285.49small ribosomal subunit biogenesis GTPase RsgA n=2... [more]
A0A2N1A4P9_9GAMM6.960e-20185.17Small ribosomal subunit biogenesis GTPase RsgA n=2... [more]
M4U557_9GAMM3.150e-19782.65Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
UPI001EE7D1C99.020e-19783.60small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A1SZV8_PSYIN1.890e-19682.97Small ribosomal subunit biogenesis GTPase RsgA n=2... [more]
A0A2N0X2S6_9GAMM5.210e-19683.60Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A0P9CIX7_9GAMM3.500e-19481.39Small ribosomal subunit biogenesis GTPase RsgA n=2... [more]
A0A137SMI3_9GAMM3.870e-14966.35Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
UPI001E38566D5.390e-14765.92small ribosomal subunit biogenesis GTPase RsgA n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101628contigP-canaliculata_contig101628:1..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score565.8
Seed ortholog evalue1.2e-158
Seed eggNOG ortholog1278307.KB907010_gene3620
Preferred namersgA
KEGG rclassRC00002,RC00017
KEGG koko:K06949
KEGG ReactionR00615,R02135
KEGG Pathwayko00730,ko01100,map00730,map01100
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022613,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0036094,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0071840,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
EggNOG OGs1MUEF@1224,1RMMB@1236,2QHWV@267894,COG1162@1,COG1162@2
EC3.1.3.100
COG Functional cat.S
BiGG ReactioniAF1260.b4161,iBWG_1329.BWG_3876,iECDH10B_1368.ECDH10B_4356,iECDH1ME8569_1439.ECDH1ME8569_4021,iEKO11_1354.EKO11_4148,iEcDH1_1363.EcDH1_3829,iEcolC_1368.EcolC_3849,iJO1366.b4161,iUMNK88_1353.UMNK88_5099,iY75_1357.Y75_RS21675
Best tax levelPsychromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size954
Cds size954
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.4164674-CDS-P-canaliculata_contig101628:0..9541622815589.4164674-CDS-P-canaliculata_contig101628:0..954Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101628 1..954 +
1693494153.533547-CDS-P-canaliculata_contig101628:0..9541693494153.533547-CDS-P-canaliculata_contig101628:0..954Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101628 1..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101628.250.1prot_P-canaliculata_contig101628.250.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101628 1..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101628.250.1

>prot_P-canaliculata_contig101628.250.1 ID=prot_P-canaliculata_contig101628.250.1|Name=mRNA_P-canaliculata_contig101628.250.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=318bp
QWDESELGPKLEGLVVSRFGQHADIEDEQGKVERCTLRRSIRSLVTGDRV
VWRAGKESHQGISGVIEAVHPRKTVLTRPDYYDGIKPIAANIDHIVIVSS
IAPEFSRNIIDRYLVACEDIGITPIIVLNKVDLLTDETAALIGKELQSYR
DIGYTVIYSSMHGDGLDNLKSVMKDKINIFVGQSGVGKTSLLNMLLPEVE
AVTGEISEGSGLGKHTTTTARLYHFSDGGDLIDSPGIREFSLWHLEAERI
ASGFIEFREHLGNCRFRDCKHLADPGCALVEAVENGQIDNARFNSFLRIL
ETMDDAKNARHRDPNVY*
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mRNA from alignment at P-canaliculata_contig101628:1..954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101628.250.1 ID=mRNA_P-canaliculata_contig101628.250.1|Name=mRNA_P-canaliculata_contig101628.250.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at P-canaliculata_contig101628:1..954+ (Pelvetia canaliculata dioecious)
CAATGGGATGAATCTGAACTCGGGCCAAAACTGGAAGGGTTAGTTGTTAG TCGATTTGGTCAACATGCAGATATTGAAGATGAACAAGGTAAAGTAGAGC GTTGTACTTTACGACGTTCAATTCGTTCTTTAGTGACTGGTGATCGTGTT GTATGGCGAGCTGGAAAAGAATCGCATCAAGGTATCAGCGGTGTTATTGA AGCAGTCCACCCACGAAAAACCGTATTAACTCGCCCAGATTATTACGATG GTATTAAACCTATAGCAGCCAATATAGATCATATTGTGATTGTAAGCTCG ATTGCGCCTGAATTTTCAAGAAATATTATTGACCGCTATTTAGTGGCCTG TGAAGATATTGGTATCACACCGATTATTGTTCTCAACAAAGTAGATTTAT TAACAGACGAAACGGCTGCACTGATCGGCAAAGAATTACAAAGCTACCGT GACATTGGCTATACAGTGATTTATAGCTCAATGCATGGAGATGGTTTAGA CAACTTAAAATCAGTGATGAAAGATAAGATAAATATTTTTGTTGGTCAGT CTGGTGTTGGAAAAACCTCATTATTGAATATGTTATTACCTGAAGTGGAA GCAGTAACTGGTGAGATCTCTGAAGGCTCTGGATTAGGAAAGCATACAAC CACCACTGCTCGTCTGTATCATTTTAGCGATGGTGGTGATTTAATTGATA GCCCTGGAATTCGTGAGTTTTCTCTATGGCACTTAGAGGCCGAACGCATA GCTAGTGGCTTTATAGAATTTAGAGAGCATCTAGGAAATTGTCGTTTTCG TGATTGTAAACACCTAGCGGACCCTGGTTGTGCACTAGTTGAAGCCGTTG AAAATGGACAAATCGACAATGCCCGGTTTAATAGTTTTTTACGTATTTTG GAAACAATGGATGATGCTAAAAATGCGCGTCATCGAGATCCTAATGTTTA CTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101628:1..954+

>mRNA_P-canaliculata_contig101628.250.1 ID=mRNA_P-canaliculata_contig101628.250.1|Name=mRNA_P-canaliculata_contig101628.250.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1908bp|location=Sequence derived from alignment at P-canaliculata_contig101628:1..954+ (Pelvetia canaliculata dioecious)
CAATGGGATGAATCTGAACTCGGGCCAAAACTGGAAGGGTTAGTTGTTAG
TCGATTTGGTCAACATGCAGATATTGAAGATGAACAAGGTAAAGTAGAGC
GTTGTACTTTACGACGTTCAATTCGTTCTTTAGTGACTGGTGATCGTGTT
GTATGGCGAGCTGGAAAAGAATCGCATCAAGGTATCAGCGGTGTTATTGA
AGCAGTCCACCCACGAAAAACCGTATTAACTCGCCCAGATTATTACGATG
GTATTAAACCTATAGCAGCCAATATAGATCATATTGTGATTGTAAGCTCG
ATTGCGCCTGAATTTTCAAGAAATATTATTGACCGCTATTTAGTGGCCTG
TGAAGATATTGGTATCACACCGATTATTGTTCTCAACAAAGTAGATTTAT
TAACAGACGAAACGGCTGCACTGATCGGCAAAGAATTACAAAGCTACCGT
GACATTGGCTATACAGTGATTTATAGCTCAATGCATGGAGATGGTTTAGA
CAACTTAAAATCAGTGATGAAAGATAAGATAAATATTTTTGTTGGTCAGT
CTGGTGTTGGAAAAACCTCATTATTGAATATGTTATTACCTGAAGTGGAA
GCAGTAACTGGTGAGATCTCTGAAGGCTCTGGATTAGGAAAGCATACAAC
CACCACTGCTCGTCTGTATCATTTTAGCGATGGTGGTGATTTAATTGATA
GCCCTGGAATTCGTGAGTTTTCTCTATGGCACTTAGAGGCCGAACGCATA
GCTAGTGGCTTTATAGAATTTAGAGAGCATCTAGGAAATTGTCGTTTTCG
TGATTGTAAACACCTAGCGGACCCTGGTTGTGCACTAGTTGAAGCCGTTG
AAAATGGACAAATCGACAATGCCCGGTTTAATAGTTTTTTACGTATTTTG
GAAACAATGGATGATGCTAAAAATGCGCGTCATCGAGATCCTAATGTTTA
CTAACAATGGGATGAATCTGAACTCGGGCCAAAACTGGAAGGGTTAGTTG
TTAGTCGATTTGGTCAACATGCAGATATTGAAGATGAACAAGGTAAAGTA
GAGCGTTGTACTTTACGACGTTCAATTCGTTCTTTAGTGACTGGTGATCG
TGTTGTATGGCGAGCTGGAAAAGAATCGCATCAAGGTATCAGCGGTGTTA
TTGAAGCAGTCCACCCACGAAAAACCGTATTAACTCGCCCAGATTATTAC
GATGGTATTAAACCTATAGCAGCCAATATAGATCATATTGTGATTGTAAG
CTCGATTGCGCCTGAATTTTCAAGAAATATTATTGACCGCTATTTAGTGG
CCTGTGAAGATATTGGTATCACACCGATTATTGTTCTCAACAAAGTAGAT
TTATTAACAGACGAAACGGCTGCACTGATCGGCAAAGAATTACAAAGCTA
CCGTGACATTGGCTATACAGTGATTTATAGCTCAATGCATGGAGATGGTT
TAGACAACTTAAAATCAGTGATGAAAGATAAGATAAATATTTTTGTTGGT
CAGTCTGGTGTTGGAAAAACCTCATTATTGAATATGTTATTACCTGAAGT
GGAAGCAGTAACTGGTGAGATCTCTGAAGGCTCTGGATTAGGAAAGCATA
CAACCACCACTGCTCGTCTGTATCATTTTAGCGATGGTGGTGATTTAATT
GATAGCCCTGGAATTCGTGAGTTTTCTCTATGGCACTTAGAGGCCGAACG
CATAGCTAGTGGCTTTATAGAATTTAGAGAGCATCTAGGAAATTGTCGTT
TTCGTGATTGTAAACACCTAGCGGACCCTGGTTGTGCACTAGTTGAAGCC
GTTGAAAATGGACAAATCGACAATGCCCGGTTTAATAGTTTTTTACGTAT
TTTGGAAACAATGGATGATGCTAAAAATGCGCGTCATCGAGATCCTAATG
TTTACTAA
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