mRNA_P-canaliculata_contig101338.223.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL35_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q      T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:   49 VSGGIVTCGGGAVSWFSRTQRCVTISTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 131

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.380e-16
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:   75 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 157

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.760e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI++A N  ++  S
Sbjct:   45 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNS 127

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.310e-16
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:  120 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 202

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.470e-16
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL EVV+ +LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:   80 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 162

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JKN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-15
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++M   G ISW SR Q+  A  T+EAEYV+L++V+++VLFLR+V  FM P   +  ++VFEDN+GAI+LA N  ++  S
Sbjct:  648 VSGGLVMCGGGCISWFSRTQKCVALSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCISVFEDNQGAIQLAQNPISNSNS 730

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.180e-15
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG  +M  +G ISW SR Q+     T+EAEYV+L++V+++VLFLR+V  FM P   +  + VFEDN+GAI+LA N  ++  S
Sbjct:  157 VSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNS 239

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5L4G3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.340e-15
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VF+DN+GAIKLA N  ++  S
Sbjct:  763 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFDDNQGAIKLAQNPISNSNS 845

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.990e-15
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2

Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:  326 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 408

[Close]

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.300e-15
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = -2

Query:  136 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATN 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N
Sbjct:  247 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 322

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5KL35_9PHAE	1.050e-16	46.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUW6_9PHAE	4.380e-16	46.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JI51_9PHAE	5.760e-16	45.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWJ4_9PHAE	9.310e-16	46.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEZ8_9PHAE	9.470e-16	48.19	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKN1_9PHAE	1.760e-15	49.40	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KD60_9PHAE	2.180e-15	48.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L4G3_9PHAE	3.340e-15	46.99	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JFG2_9PHAE	3.990e-15	46.99	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JPC7_9PHAE	4.300e-15	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101338.223.1	prot_P-canaliculata_contig101338.223.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig101338 450..963 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.0277896-UTR-P-canaliculata_contig101338:361..449	1622815587.0277896-UTR-P-canaliculata_contig101338:361..449	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig101338 362..449 +
1693494152.2984073-UTR-P-canaliculata_contig101338:361..449	1693494152.2984073-UTR-P-canaliculata_contig101338:361..449	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig101338 362..449 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.0383196-CDS-P-canaliculata_contig101338:449..477	1622815587.0383196-CDS-P-canaliculata_contig101338:449..477	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101338 450..477 +
1693494152.3071938-CDS-P-canaliculata_contig101338:449..477	1693494152.3071938-CDS-P-canaliculata_contig101338:449..477	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101338 450..477 +
1622815587.0508132-CDS-P-canaliculata_contig101338:715..963	1622815587.0508132-CDS-P-canaliculata_contig101338:715..963	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101338 716..963 +
1693494152.3157997-CDS-P-canaliculata_contig101338:715..963	1693494152.3157997-CDS-P-canaliculata_contig101338:715..963	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101338 716..963 +