mRNA_P-canaliculata_contig101338.223.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101338.223.1
Unique NamemRNA_P-canaliculata_contig101338.223.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL35_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q      T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:   49 VSGGIVTCGGGAVSWFSRTQRCVTISTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 131
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.380e-16
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:   75 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 157
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.760e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI++A N  ++  S
Sbjct:   45 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNS 127
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.310e-16
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:  120 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 202
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.470e-16
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL EVV+ +LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:   80 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 162
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JKN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-15
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++M   G ISW SR Q+  A  T+EAEYV+L++V+++VLFLR+V  FM P   +  ++VFEDN+GAI+LA N  ++  S
Sbjct:  648 VSGGLVMCGGGCISWFSRTQKCVALSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCISVFEDNQGAIQLAQNPISNSNS 730
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.180e-15
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG  +M  +G ISW SR Q+     T+EAEYV+L++V+++VLFLR+V  FM P   +  + VFEDN+GAI+LA N  ++  S
Sbjct:  157 VSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNS 239
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5L4G3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.340e-15
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VF+DN+GAIKLA N  ++  S
Sbjct:  763 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFDDNQGAIKLAQNPISNSNS 845
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.990e-15
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 
Query:  115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N  ++  S
Sbjct:  326 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 408
[Close]
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.300e-15
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = -2 
Query:  136 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATN 363
            VSG ++    GA+SW SR Q+     T+EAEYVAL +VV+++LFLR++  FM P + +  + VFEDN+GAI+LA N
Sbjct:  247 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 322
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL35_9PHAE1.050e-1646.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE4.380e-1646.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI51_9PHAE5.760e-1645.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE9.310e-1646.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE9.470e-1648.19Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKN1_9PHAE1.760e-1549.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KD60_9PHAE2.180e-1548.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G3_9PHAE3.340e-1546.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JFG2_9PHAE3.990e-1546.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JPC7_9PHAE4.300e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101338contigP-canaliculata_contig101338:362..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_000290.2
Exons2
Model size364
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101338.223.1prot_P-canaliculata_contig101338.223.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101338 450..963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.0277896-UTR-P-canaliculata_contig101338:361..4491622815587.0277896-UTR-P-canaliculata_contig101338:361..449Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101338 362..449 +
1693494152.2984073-UTR-P-canaliculata_contig101338:361..4491693494152.2984073-UTR-P-canaliculata_contig101338:361..449Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101338 362..449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.0383196-CDS-P-canaliculata_contig101338:449..4771622815587.0383196-CDS-P-canaliculata_contig101338:449..477Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101338 450..477 +
1693494152.3071938-CDS-P-canaliculata_contig101338:449..4771693494152.3071938-CDS-P-canaliculata_contig101338:449..477Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101338 450..477 +
1622815587.0508132-CDS-P-canaliculata_contig101338:715..9631622815587.0508132-CDS-P-canaliculata_contig101338:715..963Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101338 716..963 +
1693494152.3157997-CDS-P-canaliculata_contig101338:715..9631693494152.3157997-CDS-P-canaliculata_contig101338:715..963Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101338 716..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101338.223.1

>prot_P-canaliculata_contig101338.223.1 ID=prot_P-canaliculata_contig101338.223.1|Name=mRNA_P-canaliculata_contig101338.223.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp
MMLHINVLRLLRLACLFVASLMAPSLSSNTFTAPTLIDGSMNSCTSLKNS
TSLTTSDKATYSASEVPAAVTSCILECQLIAPLANINTAPET
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mRNA from alignment at P-canaliculata_contig101338:362..963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101338.223.1 ID=mRNA_P-canaliculata_contig101338.223.1|Name=mRNA_P-canaliculata_contig101338.223.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=602bp|location=Sequence derived from alignment at P-canaliculata_contig101338:362..963+ (Pelvetia canaliculata dioecious)
GCGGTTTCGTGAGCAAATCCGCGTGTTGATCTTCTGACCTTACGTACGCT
ACTCTTACCCTTTGCGCGTCAGACGCGTCCCTTACTAGATGATGCTTCAC
ATCAATGTACTTAGACGTTTCGACTCAATGTTTTCCCTGACTGGAGTTGT
TTAAAGAAAAATCTGAACGCGTCTAGACCTTCTGAGCATTCCTCAGTCAA
GGAAAAAAAACGTGAAAACGTCCAGGTGGGGTGATAGGTGATAGGTGATA
GGTGATAGGCTGCCAAGACCTTTTTTATGCATGAGGGGGATCTGAGAGCC
GTAGACATGACACCGCACGTGGGGACCATACCCACCTGGATTGCCTCTTA
AAAGTCCTACGGCTAGCATGCTTGTTTGTGGCCAGCTTAATGGCCCCCTC
ATTATCTTCAAATACATTTACCGCACCGACCCTCATCGACGGTTCCATGA
ACTCCTGCACCTCTCTCAAAAATAGTACATCCCTTACTACCTCCGATAAG
GCAACGTACTCTGCCTCCGAGGTACCCGCTGCTGTTACTTCTTGCATCCT
CGAGTGCCAACTGATCGCTCCCTTGGCCAACATCAACACCGCACCTGAAA
CC
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Coding sequence (CDS) from alignment at P-canaliculata_contig101338:362..963+

>mRNA_P-canaliculata_contig101338.223.1 ID=mRNA_P-canaliculata_contig101338.223.1|Name=mRNA_P-canaliculata_contig101338.223.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig101338:362..963+ (Pelvetia canaliculata dioecious)
ATGATGCTTCACATCAATGTACTTAGACATGATGCTTCACATCAATGTAC
TTAGACTCCTACGGCTAGCATGCTTGTTTGTGGCCAGCTTAATGGCCCCC
TCATTATCTTCAAATACATTTACCGCACCGACCCTCATCGACGGTTCCAT
GAACTCCTGCACCTCTCTCAAAAATAGTACATCCCTTACTACCTCCGATA
AGGCAACGTACTCTGCCTCCGAGGTACCCGCTGCTGTTACTTCTTGCATC
CTCGAGTGCCAACTGATCGCTCCCTTGGCCAACATCAACACCGCACCTGA
AACCTCCTACGGCTAGCATGCTTGTTTGTGGCCAGCTTAATGGCCCCCTC
ATTATCTTCAAATACATTTACCGCACCGACCCTCATCGACGGTTCCATGA
ACTCCTGCACCTCTCTCAAAAATAGTACATCCCTTACTACCTCCGATAAG
GCAACGTACTCTGCCTCCGAGGTACCCGCTGCTGTTACTTCTTGCATCCT
CGAGTGCCAACTGATCGCTCCCTTGGCCAACATCAACACCGCACCTGAAA
CC
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