mRNA_P-canaliculata_contig101338.223.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL35_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16 Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q T+EAEYVAL +VV+++LFLR++ FM P + + + VFEDN+GAI+LA N ++ S
Sbjct: 49 VSGGIVTCGGGAVSWFSRTQRCVTISTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 131
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 4.380e-16 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q+ T+EAEYVAL +VV+++LFLR++ FM P + + + VFEDN+GAI+LA N ++ S
Sbjct: 75 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 157
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 5.760e-16 Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q+ T+EAEYVAL +VV+++LFLR++ FM P + + + VFEDN+GAI++A N ++ S
Sbjct: 45 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNS 127
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 9.310e-16 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q+ T+EAEYVAL +VV+++LFLR++ FM P + + + VFEDN+GAI+LA N ++ S
Sbjct: 120 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 202
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 9.470e-16 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q+ T+EAEYVAL EVV+ +LFLR++ FM P + + + VFEDN+GAI+LA N ++ S
Sbjct: 80 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 162
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JKN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN1_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.760e-15 Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++M G ISW SR Q+ A T+EAEYV+L++V+++VLFLR+V FM P + ++VFEDN+GAI+LA N ++ S
Sbjct: 648 VSGGLVMCGGGCISWFSRTQKCVALSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCISVFEDNQGAIQLAQNPISNSNS 730
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.180e-15 Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG +M +G ISW SR Q+ T+EAEYV+L++V+++VLFLR+V FM P + + VFEDN+GAI+LA N ++ S
Sbjct: 157 VSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNS 239
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5L4G3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G3_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 3.340e-15 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q+ T+EAEYVAL +VV+++LFLR++ FM P + + + VF+DN+GAIKLA N ++ S
Sbjct: 763 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFDDNQGAIKLAQNPISNSNS 845
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.990e-15 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 115 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRS 363
VSG ++ GA+SW SR Q+ T+EAEYVAL +VV+++LFLR++ FM P + + + VFEDN+GAI+LA N ++ S
Sbjct: 326 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNS 408
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 4.300e-15 Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = -2 Query: 136 VSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVRDVLFLREVQEFMEPSMRVGAVNVFEDNEGAIKLATN 363
VSG ++ GA+SW SR Q+ T+EAEYVAL +VV+++LFLR++ FM P + + + VFEDN+GAI+LA N
Sbjct: 247 VSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQN 322 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101338.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101338.223.1 >prot_P-canaliculata_contig101338.223.1 ID=prot_P-canaliculata_contig101338.223.1|Name=mRNA_P-canaliculata_contig101338.223.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp MMLHINVLRLLRLACLFVASLMAPSLSSNTFTAPTLIDGSMNSCTSLKNSback to top mRNA from alignment at P-canaliculata_contig101338:362..963+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101338.223.1 ID=mRNA_P-canaliculata_contig101338.223.1|Name=mRNA_P-canaliculata_contig101338.223.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=602bp|location=Sequence derived from alignment at P-canaliculata_contig101338:362..963+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101338:362..963+ >mRNA_P-canaliculata_contig101338.223.1 ID=mRNA_P-canaliculata_contig101338.223.1|Name=mRNA_P-canaliculata_contig101338.223.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig101338:362..963+ (Pelvetia canaliculata dioecious)back to top |