mRNA_P-canaliculata_contig10117.205.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10117.205.1
Unique NamemRNA_P-canaliculata_contig10117.205.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10117.205.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.080e-47
Identity = 141/346 (40.75%), Postives = 183/346 (52.89%), Query Frame = 3
Query:    3 NGVQVCLVRRHNARLTAVMVEDLTSRHRMCVKPDQSMTIFKLVDRETGEESVEYAKDMVFQRPCDGCQHLKSCIMAGHPLQDWATEGNDNRII--KRKSMSSTPKSPGASSP---SKSXXXXXXXXXXGKTAGVTS---TEIVASPSTATIKGRKVEG-NHRPKRRKTDTGMASSTAVASEPKA-NVGTNTPGKGAGSRSXXXXXXXXXXXPAQGRGGAAGAVSGGG-------------GGTTAETIAVRLQDMTAAEDLLRQQFQTDMQNLDKAETAKLKEIEEANAALERIRLIRKATRDKIDEQRKDMSAERQRLTHLRVKAIIREEEELRRRNEALWTACE 971
            NGVQ C++R+HNARLTAV  ++L +RHR CVKPDQ+MTIFKLVDR TGEESVEY+ DM+FQRPC  C HLK+CI+ GH L DW  EG   R    KRKS S+  K+    SP    +            KT  VT       +  P  A    RK EG    P+     T  +S     S P+A      +P   A                          VS G               G   ++IA +L  + A EDLL QQF+ DM++LD+A+ ++ KEI  A AALE+I+  R+ T+    EQRK M AER RLTHLR + ++REE E R++ + +W+A E
Sbjct:   21 NGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSSKGRKVSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXXXXXXXXXXGAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVE 366          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10117.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0T9_ECTSI1.080e-4740.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10117contigP-canaliculata_contig10117:676..10488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size3040
Cds size2022
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.1929734-UTR-P-canaliculata_contig10117:675..7311622815585.1929734-UTR-P-canaliculata_contig10117:675..731Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10117 676..731 +
1693494151.3189719-UTR-P-canaliculata_contig10117:675..7311693494151.3189719-UTR-P-canaliculata_contig10117:675..731Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10117 676..731 +
1622815585.3496401-UTR-P-canaliculata_contig10117:9526..104881622815585.3496401-UTR-P-canaliculata_contig10117:9526..10488Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10117 9527..10488 +
1693494151.4150743-UTR-P-canaliculata_contig10117:9526..104881693494151.4150743-UTR-P-canaliculata_contig10117:9526..10488Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10117 9527..10488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.2084148-CDS-P-canaliculata_contig10117:731..7821622815585.2084148-CDS-P-canaliculata_contig10117:731..782Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 732..782 +
1693494151.328486-CDS-P-canaliculata_contig10117:731..7821693494151.328486-CDS-P-canaliculata_contig10117:731..782Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 732..782 +
1622815585.2204802-CDS-P-canaliculata_contig10117:3133..32411622815585.2204802-CDS-P-canaliculata_contig10117:3133..3241Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 3134..3241 +
1693494151.3393395-CDS-P-canaliculata_contig10117:3133..32411693494151.3393395-CDS-P-canaliculata_contig10117:3133..3241Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 3134..3241 +
1622815585.232971-CDS-P-canaliculata_contig10117:4235..42981622815585.232971-CDS-P-canaliculata_contig10117:4235..4298Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 4236..4298 +
1693494151.347365-CDS-P-canaliculata_contig10117:4235..42981693494151.347365-CDS-P-canaliculata_contig10117:4235..4298Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 4236..4298 +
1622815585.257178-CDS-P-canaliculata_contig10117:4724..48801622815585.257178-CDS-P-canaliculata_contig10117:4724..4880Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 4725..4880 +
1693494151.355415-CDS-P-canaliculata_contig10117:4724..48801693494151.355415-CDS-P-canaliculata_contig10117:4724..4880Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 4725..4880 +
1622815585.2686307-CDS-P-canaliculata_contig10117:5220..53221622815585.2686307-CDS-P-canaliculata_contig10117:5220..5322Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 5221..5322 +
1693494151.363236-CDS-P-canaliculata_contig10117:5220..53221693494151.363236-CDS-P-canaliculata_contig10117:5220..5322Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 5221..5322 +
1622815585.2821562-CDS-P-canaliculata_contig10117:5827..60491622815585.2821562-CDS-P-canaliculata_contig10117:5827..6049Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 5828..6049 +
1693494151.3712678-CDS-P-canaliculata_contig10117:5827..60491693494151.3712678-CDS-P-canaliculata_contig10117:5827..6049Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 5828..6049 +
1622815585.2981772-CDS-P-canaliculata_contig10117:6683..67551622815585.2981772-CDS-P-canaliculata_contig10117:6683..6755Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 6684..6755 +
1693494151.3801754-CDS-P-canaliculata_contig10117:6683..67551693494151.3801754-CDS-P-canaliculata_contig10117:6683..6755Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 6684..6755 +
1622815585.3147976-CDS-P-canaliculata_contig10117:7369..74471622815585.3147976-CDS-P-canaliculata_contig10117:7369..7447Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 7370..7447 +
1693494151.3942883-CDS-P-canaliculata_contig10117:7369..74471693494151.3942883-CDS-P-canaliculata_contig10117:7369..7447Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 7370..7447 +
1622815585.3345692-CDS-P-canaliculata_contig10117:8356..95261622815585.3345692-CDS-P-canaliculata_contig10117:8356..9526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 8357..9526 +
1693494151.4058852-CDS-P-canaliculata_contig10117:8356..95261693494151.4058852-CDS-P-canaliculata_contig10117:8356..9526Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10117 8357..9526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10117.205.1prot_P-canaliculata_contig10117.205.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10117 732..9526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10117.205.1

>prot_P-canaliculata_contig10117.205.1 ID=prot_P-canaliculata_contig10117.205.1|Name=mRNA_P-canaliculata_contig10117.205.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=674bp
MVEDLTSRHRMCVKPDQSMTIFKLVDRETGEESVEYAKDMVFQRPCDGCQ
HLKSCIMAGHPLQDWATEGNDNRIIKRKSMSSTPKSPGASSPSKSQSQGS
SSSSRGKTAGVTSTEIVASPSTATIKGRKVEGNHRPKRRKTDTGMASSTA
VASEPKANVGTNTPGKGAGSRSGAGSRSAASSRPAQGRGGAAGAVSGGGG
GTTAETIAVRLQDMTAAEDLLRQQFQTDMQNLDKAETAKLKEIEEANAAL
ERIRLIRKATRDKIDEQRKDMSAERQRLTHLRVKAIIREEEELRRRNEAL
WTACEASAGFALGSTPSSAATASARGEHGRPARAGRAGRSPARQVHPTVP
VPAAAAAAPTPNGYSSSSPSSSSVSFAQHGLGVSAAAGGFHVINPWPASG
RAIEGGRGNNGDDGESEGTEEGDINVEGGGTHEERAVRGGGDGLMSGEAD
SASEAGLEEGSRKEVGSGEGSGEGRGGARPSVEQAAETRAVNENGSISGV
DEDEGEIPAEVETAMDEEKEEGEENEAGTTEEMEWTSEPEENGGPSRGTD
GKRDGDEEAEERGGLVGNVGALSEHEEDEVEVRGSVEDAPIDSEAFGVAG
PGRTNNEGGSEAERGTGSESSSGSRDKERPAVRDELDGVDGDVRCEDEEE
ERVDVGGSPVGGGVRGEVEVATR*
back to top

mRNA from alignment at P-canaliculata_contig10117:676..10488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10117.205.1 ID=mRNA_P-canaliculata_contig10117.205.1|Name=mRNA_P-canaliculata_contig10117.205.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9813bp|location=Sequence derived from alignment at P-canaliculata_contig10117:676..10488+ (Pelvetia canaliculata dioecious)
AGAACGGAGTGCAGGTATGTCTCGTACGAAGGCACAACGCCAGGCTTACC GCGGTCATGGTGGAGGACCTCACGTCTAGGCACAGAATGTGCGTGAAGCC GGATCAGGTACATATATATACTGACTATAAATACAGTATACTGACTTTAT TCAAAAAGCGATTTTTATTACTTGTGTATTTAAGATTTCACGTGATCGAT ATTTAGTTGTTTTTTAAAAGGCAGCAAGTGCAAAAGAGGGGTTTCGAGGG CCTTCGAAGGCGCGTTTCTTCTTCGCCACTTCGATACGAGAAAAAAAAAA CGAAACATAGGGTCCTGTCTGTGTAGTACAAATTTTGTTGGGGGGAATAA ATAGATTTGTAAGGATTGATTTGAGTTTGTCATCCGTGGCCTCCGGTGCG CATCGAACCCGCGCCGCCCCTACTGAATGCAATTTTTTTCTCCTTTCTCC GATCTCCTGATAGAGTTTTTTCGAGCAGCGCCAGCGCACGTTTTCCCGAG GGCCTTCAGTTGACGACCAACTTTTTTTTCCGCCGGAAAGTGTGACTGCT GTCGCACTGTTCCTGTGTCAGTTGTTTGACAAAAAACATACTGGTACAGT ACATGTTGTTTCCCCGATTGACAAACCCCACTACTGTACTCACTAATAGT AGATTTCTCTTGAGCACGATTTGGCGGCTGCTCGAGGGAGGGGAGTATCT TGGCTCATTGTGTGAGCATCGCCATTGTATTATATAGTAACTTCTATGGT GTACATGATACTATCCCCGAAGCTAGAATTCCTCGATTTCTTGTATGCTG TTAATACTAGAATATCTTGGCGGCGTGCGAGCACGCGGGCAGTGTACTCC CCGAGAATTTCGTGGTGTGTACGGTACGGTACGTCTTGAGAGAACTTTGT CGTGGTTTTTGCAGGGAAACCTCGAGGCGTTAACACCAGATCTCCTTCCG TTTGCAGAGTTGCCTCCCCCGATTGAACGAGTTTTGTGTTGGGGGTTTTC GTTATCCGTTGTAATAACCAAAAAAATAAAATGTCATGTTGTGTTGGAAG AAACATCTGAAGAATGTAGACCTTCTGAGCATCCCCCAGTCAGGGGGAAA AATGTCAAAACGTCACTAAAAGAAACCATAAATATTCGTGTACCGTACGG CCATGCCTCCGGCTATGGTTTGATCTACAGGTTCATGTATGTGTTATCTA GTAGGGGGGAGGGGGCGGGGGTGGCGGGGGGCAGCAAGTGTTCAGAAATA TATATGAACGCATCTAGGCCTTCTGAGCATCCCCTAGTTAGGGGGAAAAG CTGTCAAAACGTTTAGGTGGGATCATAGGCTGCAAAGACAAAACCTCCCT ACGGTACTGTATTTCAATTGGGTTCCCCAATGGTCGTAAGATAGGGTACA ACAGTATCATGTCGGGGAGAAACCCACCGATATACTGAGCACTTAATATT AATTGCCATGCAGGGACTCCAGACAAAACAAAGACAAAATACATGATGAG CCTGGATTACAGCTCAGTTTGTACTGTAACATTGTTTTGTTGTACAGTAA CGAGAATTTATACTGTGATAACACGGTGAGAAAGTTTGTACACTCTGCCG ACAATCCCTCTGTAACCCTCCAGCCTCTTTGGTCTCATGTCTCTTGTGTG TTTGTGTGAAAACGTTTTACGCGACACGGTACCCTCCCACCCACGATAAT TATCACGAGAGCTTGAAAGTATGCACGTTGATTTGTGTTGCTGCAAGCCC TCTTTGAAGGCACGCACACGTAGCTCTAGAGCTATCTATCTATCTATCGA TATCAAACACAATCTGAAACTCAGTAGGTCCAGTACACTCCGTAATACGG AGTACAGTACTGTAGTATTATACAGTACGCTTCGAATTGCTTCGAGAAAC ATACATAGGTGTACTGTTTTAATTATAGTATAATGTACCAGGCATATGGT AACGACACCCGCTCCATGCTATCCCCAATCGTGTCAAGTTGGGAACACAT AGAGAGATACTCTAACGACTGCAACGATCGCACCTTGAAGAGGAAACTCG TGGGTACAGTAAATGAAGTAAGGGATGCAAATCAGTAGCCCTCTTAAATA GCCTAATACTAGTGTGTTTTTTTTCCGTGTGCCGTGCCCGTTCCACTTTC GTTCGTTATTTTGCTATTAATAGCAGTAAAGAAATATCGGTATAGTAACG CGCACCAACACCTTCCCCGAGCACCCCCTTCCCCTCCGCCCCCCAACCGT TCGTTCGTTTGCCCATGGGAACGGTGTCGAAACTATATTCGCACGTGTCG CAGAGCTAGGCAGATGCTACCCCTGCTGGGGATTCCAAAAGTAACGCCTC CCTCCCTCCTCCTGTTACCGTTACCGGTACCGGTACTACTTTGGTACTGA CTTCTACTCGGTACTACTTTGGTACTGTAATGCTGTATACGATGGTGTTT TACCACAGTCGATGACTATCTTCAAGCTGGTGGACCGTGAAACCGGGGAG GAGAGCGTGGAGTACGCCAAGGATATGGTGTTCCAGAGGCCGTGCGATGG GTGTCAGCACCTCAAGGTGCGAGACGTAACCAAATGCTATTAATAATAGT AATAATACTTGGCCGCACTACCATCCCCCCCCCCTCTCCCCTACCAAAAT AACGCCACTCGTTTCGAGTCTGTAATAGAGTAGAGTTGCGTATGGTGTTC CAAAGGCCGTGCGATGGGTGTCAGCACTTTAAGGTGCGGGACGTAACCAG ATGCTATTAATAATACTAATACGTAACCGTATTACCATCCCCCCCCCTCT CCCCTACCAAAATAACGCCACTCGTTTTGAGTCTCTAATAGAGTAGAGTT ACGGAGCAGGAGCACCCACGCCGTGCGATCCATCGAGTGACCACTTTGAT AACAATTGAACGAATGCTTTTTTGTCTCGCGGCCCGCCGGAGTCGCGGCG GGTTACTTACAGTGGCGTTGGGAAAATGGTTAAAGTAGAAAACGATTTGC TGCTGAAGAAGACGCTTTTTACGGAATCCGTGCGAAAACGTTTGGAAGAG TCTTGTTCGAACCTGATGCTATAGTGGTGGTATTAGGTTGTGTCGTTCGA GAGGAGATGCGGTGTCACGATAAGAAAGACGTCATCGTGACATTTGCGAT ATATATATATTAATAGTTAAGTAGCTTCCAACCCCGAAAACGAACGCCAA ACAGGAAAAAAAAACAGACTCGTGAATCACTCGTCGATGCAGCACACGGT TATAACAAATCAAGAGTAACGCGTCTACGGGTTGTGCAACTCCTCTTGCA CTTTGTGTTTTCAGGTCGTTTAGCCTCACTTTCTTTGTTCTGTCTTGGGA ATTTGTAGTGAATGGGGGGGAAACACTGAACAATTGTGTACTATGATAGT AGCAGTTTCGAGTTCAGCAATCCGTAGGAGCACAGCCGCAGCCATGCGGT CCGGGCCTGAATCGTTGACTCCCCCCCTCCCCCCCCCCCAACTCACTTTT TTATTCCTCCACTCTTTCCCCGTTGGCAAAACGGCCTCACCGACGAATCT GTGACACCAGTCGTGCATAATGGCCGGGCATCCTCTTCAGGACTGGGCCA CCGAGGGAAACGACAACCGAATCGTAAGACCTGTGTACCGGATGGGGGGG GATGGGAGGGAGACTTTGTTACAGCCGAATCGTAAGACCTGTGTACCGGG AGGGGGGGGCATTTTGTGCCTTGTGACTTGAGTGGGCGCGGTTTCCGTTC TAAGGAAACCGCGCCTTTTTTTTATTATTTTGACCCCGTCGTCGCACCGT CGCCTGCTGACCCGCGCCAAGGTGGGCGTCCTTGAACAGCTTGCGGGCGG GGTGCCTGCCGGGTGTGCGTGGCACCTTGTCGTTTCGCTCAGTCTGCGTT TTTATCTGTGTATCGTTTTTATCGAACGAACCACCGTCTACTCGTGTGAC GCGCGATTTGCTATTAATAACAATACATGAGAACCCCCCCCGCCTCTTTA GAGCGCATTGTGCCCGACGCTAAGCGACTCGCCGCGCTCGTTCGCGCAGA TCAAACGCAAATCGATGTCGTCGACGCCCAAGTCGCCCGGGGCGTCCTCC CCATCGAAGAGCCAGAGCCAGGGGTCTTCATCTTCATCGAGAGGAAAAAC CGCCGGCGTCACCTCTACAGAGATAGTGGCATCACCTTCAACTGCGACGA TAAAGGTGCGCGATTAAGTCCAGCCCTTTTTTTTTTTTCCTCGCTCCTTT CGTTCAAACCTCAAATCGTAATATAGCTCTCTACTAGTGTTGCAGATAAG ATTTTGTTGTTGTGTTGTTTTTTCTAGCTTTGCGCTATTACGTGTCCTTT TTTATTAATCAGCCTCTTCTTTTCTCCCGGCAAAGGAGTTGCGCAACATA CGGCGTTATCGTTTTTGGCCTCGTGTATGTGTGCCCCTTTTGGAGCAAAC GCGTGCTTGTTCCGGCGCCCCCCATCACAAATACTAGAGTTAACTCATTT TGTGCGGCGCCCGGCGTCAACGTTGCCTTTTGGTTGGGGGCGCAGGGGCG GAAAGTCGAGGGAAACCACCGACCGAAACGGCGGAAAACGGACACGGGCA TGGCGAGCTCTACTGCTGTTGCTTCGGAGCCAAAGGCCAATGTCGGGGTG AGGCGTGTGTAGTCTTGTCGCAAGTCTGCTTATCTCTTGGTTGCTGGCAG AATGCGCGGGGAGTTTATGCTACGTGGAGGCGTTTCTGACGTCCATCCAA GCGCGCGCGTGGGGGGGGTCAGTTGCCCGGCAAAAATGGGCGGGAATGCC GAAGCGCGATATCTAAACAAAGAACCCCTTCCAGGCATGCACCCCCTAAC ATCGATCGGATTCCACGCGCAAGGTTTGAGCCGTTTTAGGTCGTCGCAGC GATGGACTGTTAGAAAACCCCTTTTGGAAGACCCAGCGCAAAGTGATGCT CAAATCATGTCTGGTAGAGAGCCCCCGAGTCTCCCCCCCCCCCCTCCCTT ATCGCCGCATTTTTCAATGCTTTATTGCTTTAATTTGTCTTTGGCGAAAG CACCCACCCACAAATCAATCAGTTGATACCTGAGGCCGCCAGTAATCGAA GCTGTCGCTGCTGCTGCTTCTGCCGTCTTACGCCTTGGTAACGACGCACT AGACCAATACCCCCGGCAAGGGAGCTGGATCTCGATCAGGAGCGGGATCA CGATCGGCGGCGTCATCACGACCAGCGCAGGGCAGAGGAGGGGCGGCTGG GGCGGTGAGTGGTGGCGGCGGGGGGACGACCGCAGAAACTATCGCGGTGC GGCTTCAGGATATGACTGCGGCGGAAGACCTTCTGCGCCAACAGTTCCAA ACAGACATGCAGAATCTGGACAAGGTGGGCGGAAAATAGTCGGGCGGACG TAGAGTGGTGCTCCCCGGGGGTGCAAGGAGTTGCGATCGCGAGCATGCTT GACGGTGTAGCCCTCCTGCGAAGCTTCTTCAAGGCAACTTTGTGGTTACA ATCCTCGGTCGACCTCTCAGCGTATCGTTCCTGTTTTGCTTTCCCCGTGA CGTGACCTGATCAGCCCGAGACGCGGCGTAGGATTGTAATTATTTTCATT TTTTTGCGTGCTGCTGTTGTACCCCGACGGCATCCAGTGGAACTGGTATG CTGCATCTATCTAATAGCATGCAGGCGGGTTGTCTTCGGGGGTCCTTTCG CTCCAACTCTGTGATATAGTTCGTAAGGGGAGGGGAGGGAAATAAAATAA TAATAACGAAGAGAACATGAAACGACAAAAAGCACCTACTTTACTAATAC TAGTATTTTAGCAGCACATAATTAAAAAAGGGAGGGTGCAACGTGAATGT GGTCCTCCATTTGCTACTCTTGTATCTTTGCTTGCTCCGTTCCTTCGCCC GTGCTAATGAATAATAAGTTGGTATCTTTAATGAAATAACAAAATGTTGT TGTCCTCGCATGGGTGTGGATGGATGCCCTTCCTCCTCTCCTTCTCCATG GAAAAAAGGCCGAAACGGCAAAGCTGAAGGAGATTGAAGAGGCCAATGCT GCGCTGGAGAGAATACGCCTCATACGAAAGGTGTGATGCTGCAAGAGACG TCTTGTCTGACCTGGCCTGACTGGCGGCGTTGCCGACATGTTGTCGACTT TCGACGGCGTCGCTTGATGGTTGGTTGGTTTTAACACGCTCAGCCCACCA CCCCTGGCGACTATTAATAGTGTTGTTGCTGGTGCCTAGTGCTGCGTGCA TGTTGCGACAAGTTCCCACCTAAACCTTTCGACCTATCAGAAGGTTTAGA TGCGCTAGTTCAGATTTTTCTTCGAACCCCCGCTTCACGAACGCACAAAA AGAAACAAACAAACTTATTTTGCGGCTGTCTATATTCCATTTGCCTTTCT ATATTCTGGCGGACTTGCCCTTTCACTTGTAGTGCCACCAACAAAGAAAG GAGAAAAATAAATATATACATATATACTGGTATATACTAGTGTATATCAT ATTTGAAAGTCGTCGGTCTTTTTTGCTTTTATCTGTCGCGCTGAATCTCC GAACACCACGCCAACGTCATCGGGCACGATCTTCTCTTTCTCAGTTAAGG AATGCCTAGAATGAAACCTGCCGGTGTGTTGCTGTTGTTTCTCACATTCA ACGTATTGATTGCCAACCCGAAACTGCGCGACACAAAAAAACAGGCGACT CGCGACAAGATCGATGAGCAGCGGAAGGACATGTCGGCGGAGCGGCAGCG GCTTACACACCTTCGTGTTAAGGCAAGATACCATGCCATGCGATCTTGAG CCATGCCATTTCAAGCCATGCCATCTTAAGCCATGCCATCTTAAGCCATG CTATCTCAAGCCATGCCATCTTGAGTCATGCCATCTTAAGCCATGCCATC TTAAGCGATGCTATCTTAAGCCATGCCATCTTGAGTCATGCCATCTTAAG CCATGCCATGCCATCTTCTTTCTCTCTCTGTTATAGTTATAATACAATAC AACGTATGGTATTAGAGCTGCTGTTATAGTTCATAATCTAGGCCTTTGAC CGCCCTGACTGATCTTGTGGGAAATTTGACCACCCTGCGAGGCTCTCTTT ATACATATAACTTGTATACGCTCGTCCATAGTGTTATATATACGTATGCC CTGATTGCCTGTCTAAAAAAAAAACATTCCCTGATCGCCTGCTCTGCCGC TGTGTGTGTGTGTGTGTTTTTAATTTGATACGTGTTTGACTTGATGCGTG TTTGTGATCTGATGTGTGTTTTTGGTGTGATGTGTGTTTGTAATTTGGTC TGTGTGTGATTTGATGTGTATGCGGTTTATGTCTGTGTATGTGCGTGTGC GTGTGTATGTTGTGATATTTCGGGCGCATGTGCGTCTTGTAATTTGTATC GTAATTCCACCTGTATATTTTATGCAATTGTCTCCTTTTTACTAATATTA TGTATTCTTACTTTTTGGTCTTTTTTTTTGTGTGTCTCATCCTGCCCGCC TTGTTTGTAATACGTACGTTTGTAACACGTACATTTTTCTCTACATTTCT ATGTCCATGTGTCGTGCCGTTTTCTGTATTTGTCCGCTTGTATCTGCGCG TGTGTACGTGGTTCGTGTTTTTGCGTCTCTTTTGCTTTGTATTTATCTTT TCTGTGTATGCTCGAACGACTCTAATAGTAGGCCATTATACGCGAGGAGG AGGAGCTGAGGAGGCGGAATGAGGCGCTGTGGACGGCGTGCGAGGCATCT GCCGGCTTCGCGTTGGGGTCGACGCCATCGTCCGCCGCTACCGCGTCCGC GCGAGGGGAACATGGACGTCCTGCGCGAGCAGGACGAGCAGGACGATCAC CGGCGAGACAGGTCCATCCGACGGTGCCCGTGCCTGCTGCTGCTGCTGCC GCTCCCACTCCCAATGGATATTCATCTTCATCTCCATCTTCATCTTCTGT GTCATTTGCCCAACACGGGTTGGGAGTATCAGCAGCGGCAGGGGGTTTTC ACGTGATTAATCCGTGGCCAGCCTCCGGGAGGGCAATCGAGGGAGGACGG GGAAACAATGGCGATGATGGTGAGTCGGAGGGGACGGAAGAGGGAGACAT CAACGTGGAAGGCGGTGGCACGCACGAGGAGAGAGCGGTACGGGGGGGCG GGGATGGCCTGATGAGCGGCGAAGCGGATTCGGCTAGCGAAGCGGGTTTG GAGGAAGGATCGAGGAAGGAAGTTGGTTCCGGCGAGGGTTCGGGCGAGGG GAGAGGCGGAGCTCGCCCGAGCGTCGAGCAAGCGGCCGAAACGAGAGCGG TGAACGAAAACGGGTCGATTTCGGGTGTAGACGAAGACGAGGGCGAGATC CCGGCAGAGGTGGAGACGGCGATGGACGAAGAAAAAGAAGAGGGAGAAGA AAATGAGGCTGGGACCACGGAGGAAATGGAATGGACCTCCGAACCTGAGG AAAACGGAGGCCCCTCGCGTGGAACCGATGGGAAACGAGACGGTGACGAA GAGGCAGAGGAGAGAGGGGGGCTGGTTGGTAACGTCGGTGCCCTCTCCGA GCACGAGGAGGACGAGGTTGAGGTTCGCGGTAGTGTCGAGGACGCTCCCA TTGATAGCGAGGCTTTCGGCGTGGCGGGGCCCGGTAGGACGAACAACGAG GGCGGGTCAGAGGCCGAGCGCGGCACGGGCAGCGAGAGCAGCAGTGGCAG CAGGGATAAGGAGAGGCCCGCGGTGCGTGATGAACTAGACGGAGTTGACG GAGATGTTAGATGCGAAGATGAGGAGGAAGAGCGCGTGGACGTTGGGGGT AGTCCGGTCGGTGGCGGCGTGAGGGGCGAAGTAGAAGTAGCGACGCGGTG ACGTGAGAGAGAGTGCGAATGTCGAGACGACGATGGTGCTCCCAAATTTG CAGGCTTGTGTCGCCCGGGGAAGTGTCGTACTTTTAGGCGAACTGCAGCC GTTGTTTACTATCTCTTACTAATTTGGTCCTCGCTTTCGATTGGGTTTCT GTCCGGATTCGGGGTTTCCGATTCGGCTAGTCGTTCATATCGGAGGAGGG GGTTCGGTCGACCATTTTTTCACGTTTGAATTGTAGAGCACCAGCCGCTG GAATCTCTCCATGCGGTCTTTCACGTATGTCGAGCGGTTATCTATCGAAC GTGATCGGCGGAGCCATCAGATGACGTTTCACTTTGGCTGAAGCGCCCGC GCCCGATTACACATAAAAAACCCGCTCCAAACAGCAAGGTTGACCTGGGG GGGGGGAGGGGGAAGGTTTCTGTATAGCGAGCACACGGAGTGGTATTTTA TATTTTATTCAGGTAAAAAGTTGTCTTGCTATGCTATAGTATATGTTACT GGTGTTTTATTGTGGGTGGTGTTTTGACTTACTGGATGTGGGGGCACAGC ACCGTTTGCAAGTGTGTGAAGCAGCGCAAAAAGGCGGAGATATTACTGGT TCGACGTACGTAGACGGGAAGCGTCATCAAGCCAAGGCGAAAGGGTGGGG GAAGGGTTGTTGATTGGCTCTCTCAGCTATGTCGTCCATCGTCCAGCAGT GGTAGTATAGTAGTACCAGTAGTGCGCCGTTCTTCTGGATAACAAGGTGT TGTGTATTGTAGAAAGAATGGGCTGTGGGAGGTCCGTATAATATTACAAT GACCTATAATGAATATGCGAAGTATACCGCTCTGTCTCTACTTTATCATG TACCATGTCGATTTTTTATTTTCAATCGCTTCAGAGTTTTGAGATTTTTT CATTTACGAATAACAATGAAGAGAAAACCTTTCCAATCGTTGCACTTGCG GGAGGGAGAGGGC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10117:676..10488+

>mRNA_P-canaliculata_contig10117.205.1 ID=mRNA_P-canaliculata_contig10117.205.1|Name=mRNA_P-canaliculata_contig10117.205.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4044bp|location=Sequence derived from alignment at P-canaliculata_contig10117:676..10488+ (Pelvetia canaliculata dioecious)
ATGGTGGAGGACCTCACGTCTAGGCACAGAATGTGCGTGAAGCCGGATCA
GATGGTGGAGGACCTCACGTCTAGGCACAGAATGTGCGTGAAGCCGGATC
AGTCGATGACTATCTTCAAGCTGGTGGACCGTGAAACCGGGGAGGAGAGC
GTGGAGTACGCCAAGGATATGGTGTTCCAGAGGCCGTGCGATGGGTGTCA
GCACCTCAAGTCGATGACTATCTTCAAGCTGGTGGACCGTGAAACCGGGG
AGGAGAGCGTGGAGTACGCCAAGGATATGGTGTTCCAGAGGCCGTGCGAT
GGGTGTCAGCACCTCAAGTCGTGCATAATGGCCGGGCATCCTCTTCAGGA
CTGGGCCACCGAGGGAAACGACAACCGAATCTCGTGCATAATGGCCGGGC
ATCCTCTTCAGGACTGGGCCACCGAGGGAAACGACAACCGAATCATCAAA
CGCAAATCGATGTCGTCGACGCCCAAGTCGCCCGGGGCGTCCTCCCCATC
GAAGAGCCAGAGCCAGGGGTCTTCATCTTCATCGAGAGGAAAAACCGCCG
GCGTCACCTCTACAGAGATAGTGGCATCACCTTCAACTGCGACGATAAAG
ATCAAACGCAAATCGATGTCGTCGACGCCCAAGTCGCCCGGGGCGTCCTC
CCCATCGAAGAGCCAGAGCCAGGGGTCTTCATCTTCATCGAGAGGAAAAA
CCGCCGGCGTCACCTCTACAGAGATAGTGGCATCACCTTCAACTGCGACG
ATAAAGGGGCGGAAAGTCGAGGGAAACCACCGACCGAAACGGCGGAAAAC
GGACACGGGCATGGCGAGCTCTACTGCTGTTGCTTCGGAGCCAAAGGCCA
ATGTCGGGGGGCGGAAAGTCGAGGGAAACCACCGACCGAAACGGCGGAAA
ACGGACACGGGCATGGCGAGCTCTACTGCTGTTGCTTCGGAGCCAAAGGC
CAATGTCGGGACCAATACCCCCGGCAAGGGAGCTGGATCTCGATCAGGAG
CGGGATCACGATCGGCGGCGTCATCACGACCAGCGCAGGGCAGAGGAGGG
GCGGCTGGGGCGGTGAGTGGTGGCGGCGGGGGGACGACCGCAGAAACTAT
CGCGGTGCGGCTTCAGGATATGACTGCGGCGGAAGACCTTCTGCGCCAAC
AGTTCCAAACAGACATGCAGAATCTGGACAAGACCAATACCCCCGGCAAG
GGAGCTGGATCTCGATCAGGAGCGGGATCACGATCGGCGGCGTCATCACG
ACCAGCGCAGGGCAGAGGAGGGGCGGCTGGGGCGGTGAGTGGTGGCGGCG
GGGGGACGACCGCAGAAACTATCGCGGTGCGGCTTCAGGATATGACTGCG
GCGGAAGACCTTCTGCGCCAACAGTTCCAAACAGACATGCAGAATCTGGA
CAAGGCCGAAACGGCAAAGCTGAAGGAGATTGAAGAGGCCAATGCTGCGC
TGGAGAGAATACGCCTCATACGAAAGGCCGAAACGGCAAAGCTGAAGGAG
ATTGAAGAGGCCAATGCTGCGCTGGAGAGAATACGCCTCATACGAAAGGC
GACTCGCGACAAGATCGATGAGCAGCGGAAGGACATGTCGGCGGAGCGGC
AGCGGCTTACACACCTTCGTGTTAAGGCGACTCGCGACAAGATCGATGAG
CAGCGGAAGGACATGTCGGCGGAGCGGCAGCGGCTTACACACCTTCGTGT
TAAGGCCATTATACGCGAGGAGGAGGAGCTGAGGAGGCGGAATGAGGCGC
TGTGGACGGCGTGCGAGGCATCTGCCGGCTTCGCGTTGGGGTCGACGCCA
TCGTCCGCCGCTACCGCGTCCGCGCGAGGGGAACATGGACGTCCTGCGCG
AGCAGGACGAGCAGGACGATCACCGGCGAGACAGGTCCATCCGACGGTGC
CCGTGCCTGCTGCTGCTGCTGCCGCTCCCACTCCCAATGGATATTCATCT
TCATCTCCATCTTCATCTTCTGTGTCATTTGCCCAACACGGGTTGGGAGT
ATCAGCAGCGGCAGGGGGTTTTCACGTGATTAATCCGTGGCCAGCCTCCG
GGAGGGCAATCGAGGGAGGACGGGGAAACAATGGCGATGATGGTGAGTCG
GAGGGGACGGAAGAGGGAGACATCAACGTGGAAGGCGGTGGCACGCACGA
GGAGAGAGCGGTACGGGGGGGCGGGGATGGCCTGATGAGCGGCGAAGCGG
ATTCGGCTAGCGAAGCGGGTTTGGAGGAAGGATCGAGGAAGGAAGTTGGT
TCCGGCGAGGGTTCGGGCGAGGGGAGAGGCGGAGCTCGCCCGAGCGTCGA
GCAAGCGGCCGAAACGAGAGCGGTGAACGAAAACGGGTCGATTTCGGGTG
TAGACGAAGACGAGGGCGAGATCCCGGCAGAGGTGGAGACGGCGATGGAC
GAAGAAAAAGAAGAGGGAGAAGAAAATGAGGCTGGGACCACGGAGGAAAT
GGAATGGACCTCCGAACCTGAGGAAAACGGAGGCCCCTCGCGTGGAACCG
ATGGGAAACGAGACGGTGACGAAGAGGCAGAGGAGAGAGGGGGGCTGGTT
GGTAACGTCGGTGCCCTCTCCGAGCACGAGGAGGACGAGGTTGAGGTTCG
CGGTAGTGTCGAGGACGCTCCCATTGATAGCGAGGCTTTCGGCGTGGCGG
GGCCCGGTAGGACGAACAACGAGGGCGGGTCAGAGGCCGAGCGCGGCACG
GGCAGCGAGAGCAGCAGTGGCAGCAGGGATAAGGAGAGGCCCGCGGTGCG
TGATGAACTAGACGGAGTTGACGGAGATGTTAGATGCGAAGATGAGGAGG
AAGAGCGCGTGGACGTTGGGGGTAGTCCGGTCGGTGGCGGCGTGAGGGGC
GAAGTAGAAGTAGCGACGCGGTGAGCCATTATACGCGAGGAGGAGGAGCT
GAGGAGGCGGAATGAGGCGCTGTGGACGGCGTGCGAGGCATCTGCCGGCT
TCGCGTTGGGGTCGACGCCATCGTCCGCCGCTACCGCGTCCGCGCGAGGG
GAACATGGACGTCCTGCGCGAGCAGGACGAGCAGGACGATCACCGGCGAG
ACAGGTCCATCCGACGGTGCCCGTGCCTGCTGCTGCTGCTGCCGCTCCCA
CTCCCAATGGATATTCATCTTCATCTCCATCTTCATCTTCTGTGTCATTT
GCCCAACACGGGTTGGGAGTATCAGCAGCGGCAGGGGGTTTTCACGTGAT
TAATCCGTGGCCAGCCTCCGGGAGGGCAATCGAGGGAGGACGGGGAAACA
ATGGCGATGATGGTGAGTCGGAGGGGACGGAAGAGGGAGACATCAACGTG
GAAGGCGGTGGCACGCACGAGGAGAGAGCGGTACGGGGGGGCGGGGATGG
CCTGATGAGCGGCGAAGCGGATTCGGCTAGCGAAGCGGGTTTGGAGGAAG
GATCGAGGAAGGAAGTTGGTTCCGGCGAGGGTTCGGGCGAGGGGAGAGGC
GGAGCTCGCCCGAGCGTCGAGCAAGCGGCCGAAACGAGAGCGGTGAACGA
AAACGGGTCGATTTCGGGTGTAGACGAAGACGAGGGCGAGATCCCGGCAG
AGGTGGAGACGGCGATGGACGAAGAAAAAGAAGAGGGAGAAGAAAATGAG
GCTGGGACCACGGAGGAAATGGAATGGACCTCCGAACCTGAGGAAAACGG
AGGCCCCTCGCGTGGAACCGATGGGAAACGAGACGGTGACGAAGAGGCAG
AGGAGAGAGGGGGGCTGGTTGGTAACGTCGGTGCCCTCTCCGAGCACGAG
GAGGACGAGGTTGAGGTTCGCGGTAGTGTCGAGGACGCTCCCATTGATAG
CGAGGCTTTCGGCGTGGCGGGGCCCGGTAGGACGAACAACGAGGGCGGGT
CAGAGGCCGAGCGCGGCACGGGCAGCGAGAGCAGCAGTGGCAGCAGGGAT
AAGGAGAGGCCCGCGGTGCGTGATGAACTAGACGGAGTTGACGGAGATGT
TAGATGCGAAGATGAGGAGGAAGAGCGCGTGGACGTTGGGGGTAGTCCGG
TCGGTGGCGGCGTGAGGGGCGAAGTAGAAGTAGCGACGCGGTGA
back to top