mRNA_P-canaliculata_contig10117.205.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10117.205.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI) HSP 1 Score: 192 bits (487), Expect = 1.080e-47 Identity = 141/346 (40.75%), Postives = 183/346 (52.89%), Query Frame = 3 Query: 3 NGVQVCLVRRHNARLTAVMVEDLTSRHRMCVKPDQSMTIFKLVDRETGEESVEYAKDMVFQRPCDGCQHLKSCIMAGHPLQDWATEGNDNRII--KRKSMSSTPKSPGASSP---SKSXXXXXXXXXXGKTAGVTS---TEIVASPSTATIKGRKVEG-NHRPKRRKTDTGMASSTAVASEPKA-NVGTNTPGKGAGSRSXXXXXXXXXXXPAQGRGGAAGAVSGGG-------------GGTTAETIAVRLQDMTAAEDLLRQQFQTDMQNLDKAETAKLKEIEEANAALERIRLIRKATRDKIDEQRKDMSAERQRLTHLRVKAIIREEEELRRRNEALWTACE 971
NGVQ C++R+HNARLTAV ++L +RHR CVKPDQ+MTIFKLVDR TGEESVEY+ DM+FQRPC C HLK+CI+ GH L DW EG R KRKS S+ K+ SP + KT VT + P A RK EG P+ T +S S P+A +P A VS G G ++IA +L + A EDLL QQF+ DM++LD+A+ ++ KEI A AALE+I+ R+ T+ EQRK M AER RLTHLR + ++REE E R++ + +W+A E
Sbjct: 21 NGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSSKGRKVSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXXXXXXXXXXGAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVE 366 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10117.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10117.205.1 >prot_P-canaliculata_contig10117.205.1 ID=prot_P-canaliculata_contig10117.205.1|Name=mRNA_P-canaliculata_contig10117.205.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=674bp MVEDLTSRHRMCVKPDQSMTIFKLVDRETGEESVEYAKDMVFQRPCDGCQback to top mRNA from alignment at P-canaliculata_contig10117:676..10488+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10117.205.1 ID=mRNA_P-canaliculata_contig10117.205.1|Name=mRNA_P-canaliculata_contig10117.205.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9813bp|location=Sequence derived from alignment at P-canaliculata_contig10117:676..10488+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10117:676..10488+ >mRNA_P-canaliculata_contig10117.205.1 ID=mRNA_P-canaliculata_contig10117.205.1|Name=mRNA_P-canaliculata_contig10117.205.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4044bp|location=Sequence derived from alignment at P-canaliculata_contig10117:676..10488+ (Pelvetia canaliculata dioecious)back to top |