mRNA_P-canaliculata_contig10062.138.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A397ACU4_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACU4_9STRA) HSP 1 Score: 120 bits (301), Expect = 8.120e-31 Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC + + ++ +H Y A+NQ MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct: 62 RQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSHNFI--WLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 162
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A418DV07_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DV07_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.000e-30 Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC + + ++ +H Y A+NQ MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct: 62 RQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSHNFI--WLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 162
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A6A5AFC1_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFC1_9STRA) HSP 1 Score: 120 bits (301), Expect = 3.790e-30 Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC + + ++ +H Y A+NQ MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct: 43 RQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSHNFI--WLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 143
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A3R6WRV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WRV7_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.560e-20 Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 37 LLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
LLLPLT+SKD EVQRLA HALANLSVNC + LV + + ++A+NQ MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct: 1316 LLLPLTESKDTEVQRLAAHALANLSVNCTCSAALV-------FVVTIFHSADNQTKMANEGGIDMLIHLLQSNNEHVQRQAAKALANLGVN 1399
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: F0WLI4_9STRA (Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLI4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 5.180e-15 Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
RQ QIVEL GL+LLLPLT NLSVNC+ E +VE + I+L A+NQ+ MA EGGI+MLI +L S + H+QRQA+KA+ANL VN
Sbjct: 61 RQVQIVELCGLELLLPLTXXXXXXXXXXXXXXXXNLSVNCK-VEGVVEW-----LQINLYNVADNQQKMAGEGGIEMLIDLLGSSNEHVQRQAAKAIANLAVN 157
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A5D6Y1Z7_9STRA (Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Z7_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.880e-11 Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNC 120
RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC
Sbjct: 63 RQVQIVELEGLKLLLPLTQSKDTEVQRLAAHALANLSVNC 102
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A7S1TZL3_9STRA (Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZL3_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 4.280e-8 Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 4 QAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCED 126
Q QIVELGGL+LLLPLT S+D +VQRL+ HALANLSVN E+
Sbjct: 26 QVQIVELGGLELLLPLTHSEDHDVQRLSAHALANLSVNAEN 66
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A7S2CFR3_9STRA (Vacuolar protein 8 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFR3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.370e-7 Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVE 144
RQ QIV+L GL+LLLPLT+S + EVQRLA HALANLSVN ++ L+ +
Sbjct: 6 RQVQIVKLDGLQLLLPLTRSVNKEVQRLAAHALANLSVNADNQMLMAD 53
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A662X7V9_9STRA (Vacuolar protein 8 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7V9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.770e-7 Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 Query: 13 IVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVE 144
IVEL GL+LLLPLT+SKD EVQRLA HALANLSVN ++ E + +
Sbjct: 117 IVELDGLQLLLPLTKSKDTEVQRLAAHALANLSVNLDNKERIAK 160
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A812PGZ8_9DINO (Vacuolar protein 8 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PGZ8_9DINO) HSP 1 Score: 57.0 bits (136), Expect = 2.200e-6 Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 Query: 1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVN 117
R+ QIV+LGGL+LLLPL +S D EVQRLA HALANLSV+
Sbjct: 70 RREQIVKLGGLELLLPLAESPDTEVQRLAAHALANLSVS 108 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10062.138.1 >prot_P-canaliculata_contig10062.138.1 ID=prot_P-canaliculata_contig10062.138.1|Name=mRNA_P-canaliculata_contig10062.138.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYback to top mRNA from alignment at P-canaliculata_contig10062:9659..10549- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10062.138.1 ID=mRNA_P-canaliculata_contig10062.138.1|Name=mRNA_P-canaliculata_contig10062.138.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at P-canaliculata_contig10062:9659..10549- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10062:9659..10549- >mRNA_P-canaliculata_contig10062.138.1 ID=mRNA_P-canaliculata_contig10062.138.1|Name=mRNA_P-canaliculata_contig10062.138.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at P-canaliculata_contig10062:9659..10549- (Pelvetia canaliculata dioecious)back to top |