mRNA_P-canaliculata_contig10062.138.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A397ACU4_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACU4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 8.120e-31
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
            RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC     +    + ++  +H  Y A+NQ  MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct:   62 RQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSHNFI--WLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 162

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A418DV07_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DV07_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.000e-30
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
            RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC     +    + ++  +H  Y A+NQ  MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct:   62 RQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSHNFI--WLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 162

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A6A5AFC1_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFC1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.790e-30
Identity = 67/103 (65.05%), Postives = 77/103 (74.76%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
            RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC     +    + ++  +H  Y A+NQ  MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct:   43 RQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSHNFI--WLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 143

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A3R6WRV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WRV7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.560e-20
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 1

Query:   37 LLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
            LLLPLT+SKD EVQRLA HALANLSVNC  +  LV         + + ++A+NQ  MA EGGIDMLI +L S + H+QRQA+KALANLGVN
Sbjct: 1316 LLLPLTESKDTEVQRLAAHALANLSVNCTCSAALV-------FVVTIFHSADNQTKMANEGGIDMLIHLLQSNNEHVQRQAAKALANLGVN 1399

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: F0WLI4_9STRA (Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLI4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.180e-15
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECYNLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANLGVN 309
            RQ QIVEL GL+LLLPLT                NLSVNC+  E +VE      + I+L   A+NQ+ MA EGGI+MLI +L S + H+QRQA+KA+ANL VN
Sbjct:   61 RQVQIVELCGLELLLPLTXXXXXXXXXXXXXXXXNLSVNCK-VEGVVEW-----LQINLYNVADNQQKMAGEGGIEMLIDLLGSSNEHVQRQAAKAIANLAVN 157

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A5D6Y1Z7_9STRA (Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Z7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.880e-11
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNC 120
            RQ QIVEL GLKLLLPLTQSKD EVQRLA HALANLSVNC
Sbjct:   63 RQVQIVELEGLKLLLPLTQSKDTEVQRLAAHALANLSVNC 102

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A7S1TZL3_9STRA (Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZL3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.280e-8
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1

Query:    4 QAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCED 126
            Q QIVELGGL+LLLPLT S+D +VQRL+ HALANLSVN E+
Sbjct:   26 QVQIVELGGLELLLPLTHSEDHDVQRLSAHALANLSVNAEN 66

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A7S2CFR3_9STRA (Vacuolar protein 8 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFR3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.370e-7
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVE 144
            RQ QIV+L GL+LLLPLT+S + EVQRLA HALANLSVN ++  L+ +
Sbjct:    6 RQVQIVKLDGLQLLLPLTRSVNKEVQRLAAHALANLSVNADNQMLMAD 53

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A662X7V9_9STRA (Vacuolar protein 8 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7V9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.770e-7
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1

Query:   13 IVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVE 144
            IVEL GL+LLLPLT+SKD EVQRLA HALANLSVN ++ E + +
Sbjct:  117 IVELDGLQLLLPLTKSKDTEVQRLAAHALANLSVNLDNKERIAK 160

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BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Match: A0A812PGZ8_9DINO (Vacuolar protein 8 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PGZ8_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 2.200e-6
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1

Query:    1 RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVN 117
            R+ QIV+LGGL+LLLPL +S D EVQRLA HALANLSV+
Sbjct:   70 RREQIVKLGGLELLLPLAESPDTEVQRLAAHALANLSVS 108

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig10062.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12

ZOOM

x 1

POSITION

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Match Name	E-value	Identity	Description
A0A397ACU4_9STRA	8.120e-31	65.05	Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI...	[more]
A0A418DV07_9STRA	1.000e-30	65.05	Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI...	[more]
A0A6A5AFC1_9STRA	3.790e-30	65.05	Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI...	[more]
A0A3R6WRV7_9STRA	1.560e-20	61.54	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
F0WLI4_9STRA	5.180e-15	50.49	Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 T...	[more]
A0A5D6Y1Z7_9STRA	4.880e-11	90.00	Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID...	[more]
A0A7S1TZL3_9STRA	4.280e-8	75.61	Vacuolar protein 8 n=1 Tax=Phaeomonas parva TaxID=...	[more]
A0A7S2CFR3_9STRA	1.370e-7	64.58	Vacuolar protein 8 n=1 Tax=Florenciella parvula Ta...	[more]
A0A662X7V9_9STRA	1.770e-7	70.45	Vacuolar protein 8 n=1 Tax=Nothophytophthora sp. C...	[more]
A0A812PGZ8_9DINO	2.200e-6	74.36	Vacuolar protein 8 n=1 Tax=Symbiodinium sp. KB8 Ta...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig10062	contig	P-canaliculata_contig10062:9659..10549 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig10062:9659..10549-
coding sequence from alignment at P-canaliculata_contig10062:9659..10549-

protein sequence of mRNA_P-canaliculata_contig10062.138.1

>prot_P-canaliculata_contig10062.138.1 ID=prot_P-canaliculata_contig10062.138.1|Name=mRNA_P-canaliculata_contig10062.138.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=187bp
RQAQIVELGGLKLLLPLTQSKDVEVQRLAVHALANLSVNCEDTELLVECY
NLSSVSIHLSYAANNQELMAKEGGIDMLIVMLASPHAHLQRQASKALANL
GVNTSNKERICKAGGVPPLVRLAGSKTAGVAVEAVAALANLAVNDETEIQ
IVREGGLIPILNGAGSRDAELQSQCARALRNLSVNRE

mRNA from alignment at P-canaliculata_contig10062:9659..10549-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig10062.138.1 ID=mRNA_P-canaliculata_contig10062.138.1|Name=mRNA_P-canaliculata_contig10062.138.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=891bp|location=Sequence derived from alignment at P-canaliculata_contig10062:9659..10549- (Pelvetia canaliculata dioecious)
AGGCAAGCGCAGATTGTGGAGCTAGGCGGGTTGAAGCTCCTTCTTCCGCT
GACGCAATCAAAAGACGTGGAGGTCCAACGTCTAGCAGTGCACGCCTTGG
CCAACCTCTCTGTGAACTGTGAGGATACAGAACTGCTGTCAGTTTTGTTT
TCATCCGTTCAACCATCAGTAGTACATACAATCGTCTGACTGTCCAACTG
TACATGAGTCATACAGGTGCTTCCGTTGCACTTTTGCCGGTTGCTTTCCA
GCGTGGAATGTTATAATCTTTCATCAGTGTCGATTCACCTTTCGTACGCA
GCAAATAACCAAGAACTCATGGCCAAGGAAGGCGGGATTGACATGCTGAT
CGTGATGCTAGCTTCTCCACATGCACACCTCCAGCGACAAGCCTCCAAAG
CATTGGCGAATCTTGGGGTCAACACCTCCAACAAGGAGAGGATATGTAAA
GCCGGCGGAGTGCCTCCTTTGGTAAGACTTGCTGGATCGAAGACTGCAGG
GGTGGCTGTGGAGGCTGTTGCTGCCCTGGCCAATTTAGCCGTCAACGGTG
AGCGACACGCACAATGCACGCCTTTGGGCTGGGGTTATGTCTTTTTTCTA
TTCTCGTGTGGTTTGAGGGGTAAAATGATCCCTATCCAAGGTAATAGTTT
TAAAACATTTTACCTGAGCTCTACCCATCTTTACTTCTGCCGTTCCCGGA
ACGGAGAGTGCTGTCTTGCTCAATGGACCATATCGTGTGCACTCTCATCA
ACTGCCCCTTCAGATGAGACTGAGATTCAAATTGTGAGAGAAGGAGGCTT
GATACCGATACTCAACGGAGCGGGCTCACGCGACGCGGAGCTTCAGTCTC
AATGTGCCCGGGCGCTGCGAAACCTCTCCGTTAACCGTGAG

Coding sequence (CDS) from alignment at P-canaliculata_contig10062:9659..10549-

>mRNA_P-canaliculata_contig10062.138.1 ID=mRNA_P-canaliculata_contig10062.138.1|Name=mRNA_P-canaliculata_contig10062.138.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at P-canaliculata_contig10062:9659..10549- (Pelvetia canaliculata dioecious)
AGGCAAGCGCAGATTGTGGAGCTAGGCGGGTTGAAGCTCCTTCTTCCGCT
GACGCAATCAAAAGACGTGGAGGTCCAACGTCTAGCAGTGCACGCCTTGG
CCAACCTCTCTGTGAACTGTGAGGATACAGAACTGCTAGGCAAGCGCAGA
TTGTGGAGCTAGGCGGGTTGAAGCTCCTTCTTCCGCTGACGCAATCAAAA
GACGTGGAGGTCCAACGTCTAGCAGTGCACGCCTTGGCCAACCTCTCTGT
GAACTGTGAGGATACAGAACTGCTCGTGGAATGTTATAATCTTTCATCAG
TGTCGATTCACCTTTCGTACGCAGCAAATAACCAAGAACTCATGGCCAAG
GAAGGCGGGATTGACATGCTGATCGTGATGCTAGCTTCTCCACATGCACA
CCTCCAGCGACAAGCCTCCAAAGCATTGGCGAATCTTGGGGTCAACACCT
CCAACAAGGAGAGGATATGTAAAGCCGGCGGAGTGCCTCCTTTGGTAAGA
CTTGCTGGATCGAAGACTGCAGGGGTGGCTGTGGAGGCTGTTGCTGCCCT
GGCCAATTTAGCCGTCAACGCGTGGAATGTTATAATCTTTCATCAGTGTC
GATTCACCTTTCGTACGCAGCAAATAACCAAGAACTCATGGCCAAGGAAG
GCGGGATTGACATGCTGATCGTGATGCTAGCTTCTCCACATGCACACCTC
CAGCGACAAGCCTCCAAAGCATTGGCGAATCTTGGGGTCAACACCTCCAA
CAAGGAGAGGATATGTAAAGCCGGCGGAGTGCCTCCTTTGGTAAGACTTG
CTGGATCGAAGACTGCAGGGGTGGCTGTGGAGGCTGTTGCTGCCCTGGCC
AATTTAGCCGTCAACGATGAGACTGAGATTCAAATTGTGAGAGAAGGAGG
CTTGATACCGATACTCAACGGAGCGGGCTCACGCGACGCGGAGCTTCAGT
CTCAATGTGCCCGGGCGCTGCGAAACCTCTCCGTTAACCGTGAGATGAGA
CTGAGATTCAAATTGTGAGAGAAGGAGGCTTGATACCGATACTCAACGGA
GCGGGCTCACGCGACGCGGAGCTTCAGTCTCAATGTGCCCGGGCGCTGCG
AAACCTCTCCGTTAACCGTGAG