Homology
BLAST of mRNA_P-canaliculata_contig100537.119.1 vs. uniprot
Match: A0A5C5Y5Z8_9PLAN (PEP-CTERM motif protein n=3 Tax=Crateriforma conspicua TaxID=2527996 RepID=A0A5C5Y5Z8_9PLAN) HSP 1 Score: 83.2 bits (204), Expect = 4.160e-17 Identity = 58/128 (45.31%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 7 DNPGGTRWLLGTSPGTLGSSPDALLVDDS------NAGGFILTDANGIQNGVGPVFHSALTFDTFGLGSSSLVLAEGALEISVEGSDPVSIDFGTATVNVSAIPEPSSLCLLG-SIAGGLFLRRRRQL 369
D PG RW L S GTL S +LV+DS GG L GIQNG GPV HS LTFD G G++ L G I+ G+ P +DF TATV SA+PEPSS ++ +A F RRR+L
Sbjct: 97 DIPGLDRWNLAISNGTLNDS--GVLVNDSLGAALPGLGG--LAFYQGIQNGAGPVLHSVLTFDVIGGGTTELGFERGIGNIASNGAVP-GLDFRTATVVASAVPEPSSFAMIACGLAATAFQVRRRKL 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 372 |
| Cds size | 372 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815579.1811075-CDS-P-canaliculata_contig100537:118..490 | 1622815579.1811075-CDS-P-canaliculata_contig100537:118..490 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100537 119..490 - |
| 1693494148.2032497-CDS-P-canaliculata_contig100537:118..490 | 1693494148.2032497-CDS-P-canaliculata_contig100537:118..490 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100537 119..490 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100537.119.1 >prot_P-canaliculata_contig100537.119.1 ID=prot_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=124bp
DIDNPGGTRWLLGTSPGTLGSSPDALLVDDSNAGGFILTDANGIQNGVGP
VFHSALTFDTFGLGSSSLVLAEGALEISVEGSDPVSIDFGTATVNVSAIP
EPSSLCLLGSIAGGLFLRRRRQL* back to topmRNA from alignment at P-canaliculata_contig100537:119..490- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100537.119.1 ID=mRNA_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at P-canaliculata_contig100537:119..490- (Pelvetia canaliculata dioecious)
GACATTGATAATCCGGGCGGAACGCGATGGTTGCTTGGAACCTCGCCGGG
AACCCTTGGCAGTAGCCCTGATGCACTACTAGTAGACGATTCAAATGCTG
GTGGGTTTATTCTCACTGATGCCAATGGAATTCAGAATGGTGTTGGACCA
GTTTTTCACTCTGCGTTGACATTCGATACATTTGGCTTAGGCTCAAGCTC
TTTGGTTCTCGCCGAGGGCGCTTTGGAAATATCAGTTGAAGGTTCAGATC
CTGTCTCTATTGATTTTGGAACCGCGACTGTTAACGTCTCCGCTATTCCA
GAGCCAAGTTCGCTTTGCTTGCTTGGATCAATTGCTGGCGGACTTTTCCT
TCGCCGCCGTCGTCAGTTGTAA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100537:119..490- >mRNA_P-canaliculata_contig100537.119.1 ID=mRNA_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at P-canaliculata_contig100537:119..490- (Pelvetia canaliculata dioecious)
GACATTGATAATCCGGGCGGAACGCGATGGTTGCTTGGAACCTCGCCGGG
AACCCTTGGCAGTAGCCCTGATGCACTACTAGTAGACGATTCAAATGCTG
GTGGGTTTATTCTCACTGATGCCAATGGAATTCAGAATGGTGTTGGACCA
GTTTTTCACTCTGCGTTGACATTCGATACATTTGGCTTAGGCTCAAGCTC
TTTGGTTCTCGCCGAGGGCGCTTTGGAAATATCAGTTGAAGGTTCAGATC
CTGTCTCTATTGATTTTGGAACCGCGACTGTTAACGTCTCCGCTATTCCA
GAGCCAAGTTCGCTTTGCTTGCTTGGATCAATTGCTGGCGGACTTTTCCT
TCGCCGCCGTCGTCAGTTGTAAGACATTGATAATCCGGGCGGAACGCGAT
GGTTGCTTGGAACCTCGCCGGGAACCCTTGGCAGTAGCCCTGATGCACTA
CTAGTAGACGATTCAAATGCTGGTGGGTTTATTCTCACTGATGCCAATGG
AATTCAGAATGGTGTTGGACCAGTTTTTCACTCTGCGTTGACATTCGATA
CATTTGGCTTAGGCTCAAGCTCTTTGGTTCTCGCCGAGGGCGCTTTGGAA
ATATCAGTTGAAGGTTCAGATCCTGTCTCTATTGATTTTGGAACCGCGAC
TGTTAACGTCTCCGCTATTCCAGAGCCAAGTTCGCTTTGCTTGCTTGGAT
CAATTGCTGGCGGACTTTTCCTTCGCCGCCGTCGTCAGTTGTAA back to top
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