mRNA_P-canaliculata_contig100537.119.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100537.119.1 vs. uniprot
Match: A0A5C5Y5Z8_9PLAN (PEP-CTERM motif protein n=3 Tax=Crateriforma conspicua TaxID=2527996 RepID=A0A5C5Y5Z8_9PLAN) HSP 1 Score: 83.2 bits (204), Expect = 4.160e-17 Identity = 58/128 (45.31%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 7 DNPGGTRWLLGTSPGTLGSSPDALLVDDS------NAGGFILTDANGIQNGVGPVFHSALTFDTFGLGSSSLVLAEGALEISVEGSDPVSIDFGTATVNVSAIPEPSSLCLLG-SIAGGLFLRRRRQL 369
D PG RW L S GTL S +LV+DS GG L GIQNG GPV HS LTFD G G++ L G I+ G+ P +DF TATV SA+PEPSS ++ +A F RRR+L
Sbjct: 97 DIPGLDRWNLAISNGTLNDS--GVLVNDSLGAALPGLGG--LAFYQGIQNGAGPVLHSVLTFDVIGGGTTELGFERGIGNIASNGAVP-GLDFRTATVVASAVPEPSSFAMIACGLAATAFQVRRRKL 219 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100537.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100537.119.1 >prot_P-canaliculata_contig100537.119.1 ID=prot_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=124bp DIDNPGGTRWLLGTSPGTLGSSPDALLVDDSNAGGFILTDANGIQNGVGPback to top mRNA from alignment at P-canaliculata_contig100537:119..490- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100537.119.1 ID=mRNA_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at P-canaliculata_contig100537:119..490- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100537:119..490- >mRNA_P-canaliculata_contig100537.119.1 ID=mRNA_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at P-canaliculata_contig100537:119..490- (Pelvetia canaliculata dioecious)back to top |