mRNA_P-canaliculata_contig100537.119.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig100537.119.1
Unique Name	mRNA_P-canaliculata_contig100537.119.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig100537.119.1 vs. uniprot
Match: A0A5C5Y5Z8_9PLAN (PEP-CTERM motif protein n=3 Tax=Crateriforma conspicua TaxID=2527996 RepID=A0A5C5Y5Z8_9PLAN)

HSP 1 Score: 83.2 bits (204), Expect = 4.160e-17
Identity = 58/128 (45.31%), Postives = 70/128 (54.69%), Query Frame = 1

Query:    7 DNPGGTRWLLGTSPGTLGSSPDALLVDDS------NAGGFILTDANGIQNGVGPVFHSALTFDTFGLGSSSLVLAEGALEISVEGSDPVSIDFGTATVNVSAIPEPSSLCLLG-SIAGGLFLRRRRQL 369
            D PG  RW L  S GTL  S   +LV+DS        GG  L    GIQNG GPV HS LTFD  G G++ L    G   I+  G+ P  +DF TATV  SA+PEPSS  ++   +A   F  RRR+L
Sbjct:   97 DIPGLDRWNLAISNGTLNDS--GVLVNDSLGAALPGLGG--LAFYQGIQNGAGPVLHSVLTFDVIGGGTTELGFERGIGNIASNGAVP-GLDFRTATVVASAVPEPSSFAMIACGLAATAFQVRRRKL 219

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100537.119.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100537.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A5C5Y5Z8_9PLAN	4.160e-17	45.31	PEP-CTERM motif protein n=3 Tax=Crateriforma consp...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig100537	contig	P-canaliculata_contig100537:119..490 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	372
Cds size	372
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815579.1811075-CDS-P-canaliculata_contig100537:118..490	1622815579.1811075-CDS-P-canaliculata_contig100537:118..490	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100537 119..490 -
1693494148.2032497-CDS-P-canaliculata_contig100537:118..490	1693494148.2032497-CDS-P-canaliculata_contig100537:118..490	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100537 119..490 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100537.119.1	prot_P-canaliculata_contig100537.119.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig100537 119..490 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig100537:119..490-
coding sequence from alignment at P-canaliculata_contig100537:119..490-

protein sequence of mRNA_P-canaliculata_contig100537.119.1

>prot_P-canaliculata_contig100537.119.1 ID=prot_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=124bp
DIDNPGGTRWLLGTSPGTLGSSPDALLVDDSNAGGFILTDANGIQNGVGP
VFHSALTFDTFGLGSSSLVLAEGALEISVEGSDPVSIDFGTATVNVSAIP
EPSSLCLLGSIAGGLFLRRRRQL*

mRNA from alignment at P-canaliculata_contig100537:119..490-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig100537.119.1 ID=mRNA_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at P-canaliculata_contig100537:119..490- (Pelvetia canaliculata dioecious)
GACATTGATAATCCGGGCGGAACGCGATGGTTGCTTGGAACCTCGCCGGG
AACCCTTGGCAGTAGCCCTGATGCACTACTAGTAGACGATTCAAATGCTG
GTGGGTTTATTCTCACTGATGCCAATGGAATTCAGAATGGTGTTGGACCA
GTTTTTCACTCTGCGTTGACATTCGATACATTTGGCTTAGGCTCAAGCTC
TTTGGTTCTCGCCGAGGGCGCTTTGGAAATATCAGTTGAAGGTTCAGATC
CTGTCTCTATTGATTTTGGAACCGCGACTGTTAACGTCTCCGCTATTCCA
GAGCCAAGTTCGCTTTGCTTGCTTGGATCAATTGCTGGCGGACTTTTCCT
TCGCCGCCGTCGTCAGTTGTAA

Coding sequence (CDS) from alignment at P-canaliculata_contig100537:119..490-

>mRNA_P-canaliculata_contig100537.119.1 ID=mRNA_P-canaliculata_contig100537.119.1|Name=mRNA_P-canaliculata_contig100537.119.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at P-canaliculata_contig100537:119..490- (Pelvetia canaliculata dioecious)
GACATTGATAATCCGGGCGGAACGCGATGGTTGCTTGGAACCTCGCCGGG
AACCCTTGGCAGTAGCCCTGATGCACTACTAGTAGACGATTCAAATGCTG
GTGGGTTTATTCTCACTGATGCCAATGGAATTCAGAATGGTGTTGGACCA
GTTTTTCACTCTGCGTTGACATTCGATACATTTGGCTTAGGCTCAAGCTC
TTTGGTTCTCGCCGAGGGCGCTTTGGAAATATCAGTTGAAGGTTCAGATC
CTGTCTCTATTGATTTTGGAACCGCGACTGTTAACGTCTCCGCTATTCCA
GAGCCAAGTTCGCTTTGCTTGCTTGGATCAATTGCTGGCGGACTTTTCCT
TCGCCGCCGTCGTCAGTTGTAAGACATTGATAATCCGGGCGGAACGCGAT
GGTTGCTTGGAACCTCGCCGGGAACCCTTGGCAGTAGCCCTGATGCACTA
CTAGTAGACGATTCAAATGCTGGTGGGTTTATTCTCACTGATGCCAATGG
AATTCAGAATGGTGTTGGACCAGTTTTTCACTCTGCGTTGACATTCGATA
CATTTGGCTTAGGCTCAAGCTCTTTGGTTCTCGCCGAGGGCGCTTTGGAA
ATATCAGTTGAAGGTTCAGATCCTGTCTCTATTGATTTTGGAACCGCGAC
TGTTAACGTCTCCGCTATTCCAGAGCCAAGTTCGCTTTGCTTGCTTGGAT
CAATTGCTGGCGGACTTTTCCTTCGCCGCCGTCGTCAGTTGTAA