Homology
BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Match: A0A517Y623_9BACT (Uncharacterized protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517Y623_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 2.810e-15 Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = 1 Query: 19 EDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIFACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAEMPNYHFSMCRLSGVPRFK-DDRTNPNKKIVSFVV----NFRASSKRIKE-KIPGQRKVTLTFERDAAGEWKVTDYSHSDPRENV 534
A L F++ + A++ F+ +I + K +LYL + +L G+ E+ ++DRE + + +A +++ N+ V + PK + +AEAE+P Y FS CR++ + K + +P K V F + +FR+ + + E KIP R + L+ E+D G+WKVTDY H+ P + +
Sbjct: 9 NPALLVFLAAFV-ALVVFVAWIKTGRKEVLYLLGMVIVLDVGLVMYERFTISDREAIQATLLRVARELETNDRAAVYAAIHPKAVDQRMQAEAELPKYTFSECRITKIHETKVEGNQSPKKATVEFNIIASGSFRSGADVLGETKIP--RFIRLSLEQDTDGQWKVTDYYHASPEQAI 183
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 1 |
| Model size | 543 |
| Cds size | 543 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.6028874-CDS-P-canaliculata_contig100408:242..785 | 1622815577.6028874-CDS-P-canaliculata_contig100408:242..785 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100408 243..785 - |
| 1693494147.1982815-CDS-P-canaliculata_contig100408:242..785 | 1693494147.1982815-CDS-P-canaliculata_contig100408:242..785 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100408 243..785 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100408.104.1 >prot_P-canaliculata_contig100408.104.1 ID=prot_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=181bp
MPSWFSEDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIF
ACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAE
MPNYHFSMCRLSGVPRFKDDRTNPNKKIVSFVVNFRASSKRIKEKIPGQR
KVTLTFERDAAGEWKVTDYSHSDPRENVRL* back to topmRNA from alignment at P-canaliculata_contig100408:243..785- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100408.104.1 ID=mRNA_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at P-canaliculata_contig100408:243..785- (Pelvetia canaliculata dioecious)
ATGCCTTCCTGGTTCTCCGAAGATGCCACGTTACCTTTTATCAGCGGCAT
CATTCTTGCCGTCATCTTCTTCCTACTGTTCATTAACTCTCGCAACAAAA
TCATGCTCTACCTTGCAATCGGAATTACGCTGCTGGCTGGAGGCATCTTT
GCCTGCGAACAGCTAGTGGTGACCGACCGTGAAGAAGTCGCGATGATTGT
CAGTGACTTGGCAGACCAAGTTCAGAACAACAACGTTCAGGGTGTCGTGA
AGCGACTGAGCCCAAAGTATCAAGAAACGATTCGCCGAGCTGAAGCCGAG
ATGCCGAATTATCATTTCAGCATGTGTCGTCTGTCCGGCGTTCCCCGATT
CAAAGATGATAGAACGAACCCAAATAAAAAGATTGTTTCGTTTGTCGTCA
ATTTTCGGGCGAGTTCAAAGAGAATTAAGGAGAAAATTCCCGGCCAAAGA
AAAGTGACGCTGACTTTTGAAAGGGATGCCGCTGGAGAATGGAAAGTGAC
TGATTACTCTCACAGCGATCCTCGTGAGAACGTGCGGCTATAA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100408:243..785- >mRNA_P-canaliculata_contig100408.104.1 ID=mRNA_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at P-canaliculata_contig100408:243..785- (Pelvetia canaliculata dioecious)
ATGCCTTCCTGGTTCTCCGAAGATGCCACGTTACCTTTTATCAGCGGCAT
CATTCTTGCCGTCATCTTCTTCCTACTGTTCATTAACTCTCGCAACAAAA
TCATGCTCTACCTTGCAATCGGAATTACGCTGCTGGCTGGAGGCATCTTT
GCCTGCGAACAGCTAGTGGTGACCGACCGTGAAGAAGTCGCGATGATTGT
CAGTGACTTGGCAGACCAAGTTCAGAACAACAACGTTCAGGGTGTCGTGA
AGCGACTGAGCCCAAAGTATCAAGAAACGATTCGCCGAGCTGAAGCCGAG
ATGCCGAATTATCATTTCAGCATGTGTCGTCTGTCCGGCGTTCCCCGATT
CAAAGATGATAGAACGAACCCAAATAAAAAGATTGTTTCGTTTGTCGTCA
ATTTTCGGGCGAGTTCAAAGAGAATTAAGGAGAAAATTCCCGGCCAAAGA
AAAGTGACGCTGACTTTTGAAAGGGATGCCGCTGGAGAATGGAAAGTGAC
TGATTACTCTCACAGCGATCCTCGTGAGAACGTGCGGCTATAAATGCCTT
CCTGGTTCTCCGAAGATGCCACGTTACCTTTTATCAGCGGCATCATTCTT
GCCGTCATCTTCTTCCTACTGTTCATTAACTCTCGCAACAAAATCATGCT
CTACCTTGCAATCGGAATTACGCTGCTGGCTGGAGGCATCTTTGCCTGCG
AACAGCTAGTGGTGACCGACCGTGAAGAAGTCGCGATGATTGTCAGTGAC
TTGGCAGACCAAGTTCAGAACAACAACGTTCAGGGTGTCGTGAAGCGACT
GAGCCCAAAGTATCAAGAAACGATTCGCCGAGCTGAAGCCGAGATGCCGA
ATTATCATTTCAGCATGTGTCGTCTGTCCGGCGTTCCCCGATTCAAAGAT
GATAGAACGAACCCAAATAAAAAGATTGTTTCGTTTGTCGTCAATTTTCG
GGCGAGTTCAAAGAGAATTAAGGAGAAAATTCCCGGCCAAAGAAAAGTGA
CGCTGACTTTTGAAAGGGATGCCGCTGGAGAATGGAAAGTGACTGATTAC
TCTCACAGCGATCCTCGTGAGAACGTGCGGCTATAA back to top
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