mRNA_P-canaliculata_contig100408.104.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Match: A0A517Y623_9BACT (Uncharacterized protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517Y623_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 2.810e-15 Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = 1 Query: 19 EDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIFACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAEMPNYHFSMCRLSGVPRFK-DDRTNPNKKIVSFVV----NFRASSKRIKE-KIPGQRKVTLTFERDAAGEWKVTDYSHSDPRENV 534
A L F++ + A++ F+ +I + K +LYL + +L G+ E+ ++DRE + + +A +++ N+ V + PK + +AEAE+P Y FS CR++ + K + +P K V F + +FR+ + + E KIP R + L+ E+D G+WKVTDY H+ P + +
Sbjct: 9 NPALLVFLAAFV-ALVVFVAWIKTGRKEVLYLLGMVIVLDVGLVMYERFTISDREAIQATLLRVARELETNDRAAVYAAIHPKAVDQRMQAEAELPKYTFSECRITKIHETKVEGNQSPKKATVEFNIIASGSFRSGADVLGETKIP--RFIRLSLEQDTDGQWKVTDYYHASPEQAI 183 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100408.104.1 >prot_P-canaliculata_contig100408.104.1 ID=prot_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=181bp MPSWFSEDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIFback to top mRNA from alignment at P-canaliculata_contig100408:243..785- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100408.104.1 ID=mRNA_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at P-canaliculata_contig100408:243..785- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100408:243..785- >mRNA_P-canaliculata_contig100408.104.1 ID=mRNA_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at P-canaliculata_contig100408:243..785- (Pelvetia canaliculata dioecious)back to top |