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Homology
BLAST of mRNA_M-pyrifera_M_contig99986.22994.1 vs. uniprot
Match: A0A5A8DFN4_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DFN4_CAFRO) HSP 1 Score: 85.1 bits (209), Expect = 8.370e-20 Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 16 ELKNSISCVECLNALAYCLGPRHQFASYWREGEFDSCRQRFGELKFCFKLKAANKTELREMAKE 207
EL++SI C +C+NALA+C PRHQF YWR+G FD+C ++F EL+FC+ LK A+ + +EM ++
Sbjct: 19 ELRDSIKCTDCMNALAFCFSPRHQFDLYWRQGTFDTCAKQFEELRFCYSLKTADSAKAKEMLRK 82
BLAST of mRNA_M-pyrifera_M_contig99986.22994.1 vs. uniprot
Match: A0A176WC03_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WC03_MARPO) HSP 1 Score: 58.2 bits (139), Expect = 2.050e-9 Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 Query: 22 KNSISCVECLNALAYCLGPRHQFASYWREGEFDSCRQRFGELKFCFKLKAANKTELREMAKE 207
K S+SC C++AL +C P Q Y+REGE DSC++++ EL C LK +E+ + KE
Sbjct: 8 KKSLSCSPCIDALWFCYSPVFQVKQYYREGELDSCKEKWTELFSCISLKTRPASEVEAILKE 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 207 |
| Cds size | 207 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816917.3088865-CDS-M-pyrifera_M_contig99986:302..375 | 1622816917.3088865-CDS-M-pyrifera_M_contig99986:302..375 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig99986 303..375 + |
| 1692278254.1866426-CDS-M-pyrifera_M_contig99986:302..375 | 1692278254.1866426-CDS-M-pyrifera_M_contig99986:302..375 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig99986 303..375 + |
| 1622816917.325144-CDS-M-pyrifera_M_contig99986:468..602 | 1622816917.325144-CDS-M-pyrifera_M_contig99986:468..602 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig99986 469..602 + |
| 1692278254.1982822-CDS-M-pyrifera_M_contig99986:468..602 | 1692278254.1982822-CDS-M-pyrifera_M_contig99986:468..602 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig99986 469..602 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig99986.22994.1 >prot_M-pyrifera_M_contig99986.22994.1 ID=prot_M-pyrifera_M_contig99986.22994.1|Name=mRNA_M-pyrifera_M_contig99986.22994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MDPDSELKNSISCVECLNALAYCLGPRHQFASYWREGEFDSCRQRFGELK
FCFKLKAANKTELREMAKE back to topmRNA from alignment at M-pyrifera_M_contig99986:303..602+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig99986.22994.1 ID=mRNA_M-pyrifera_M_contig99986.22994.1|Name=mRNA_M-pyrifera_M_contig99986.22994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig99986:303..602+ (Macrocystis pyrifera P11B4 male)
ATGGATCCTGATTCTGAACTAAAGAACTCCATATCATGTGTAGAGTGCTT
GAATGCACTTGCCTACTGCCTCGGTACACCGAAAAAAACACCCATAACAA
ACCCCACAAGCCTTTTTCCCCCCTTCCCCTTTATCCTCGAACCCTTCCTT
TCCTTCCCACCCACAGGACCAAGGCATCAATTTGCAAGCTATTGGCGAGA
AGGGGAATTTGACTCTTGTAGGCAGCGTTTTGGAGAACTAAAGTTTTGTT
TCAAGCTGAAAGCAGCGAATAAGACAGAGTTGAGAGAAATGGCCAAAGAA
back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig99986:303..602+ >mRNA_M-pyrifera_M_contig99986.22994.1 ID=mRNA_M-pyrifera_M_contig99986.22994.1|Name=mRNA_M-pyrifera_M_contig99986.22994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig99986:303..602+ (Macrocystis pyrifera P11B4 male)
ATGGATCCTGATTCTGAACTAAAGAACTCCATATCATGTGTAGAGTGCTT
GAATGCACTTGCCTACTGCCTCGATGGATCCTGATTCTGAACTAAAGAAC
TCCATATCATGTGTAGAGTGCTTGAATGCACTTGCCTACTGCCTCGGACC
AAGGCATCAATTTGCAAGCTATTGGCGAGAAGGGGAATTTGACTCTTGTA
GGCAGCGTTTTGGAGAACTAAAGTTTTGTTTCAAGCTGAAAGCAGCGAAT
AAGACAGAGTTGAGAGAAATGGCCAAAGAAGACCAAGGCATCAATTTGCA
AGCTATTGGCGAGAAGGGGAATTTGACTCTTGTAGGCAGCGTTTTGGAGA
ACTAAAGTTTTGTTTCAAGCTGAAAGCAGCGAATAAGACAGAGTTGAGAG
AAATGGCCAAAGAA back to top
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