mRNA_M-pyrifera_M_contig99986.22994.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99986.22994.1
Unique NamemRNA_M-pyrifera_M_contig99986.22994.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99986.22994.1 vs. uniprot
Match: A0A5A8DFN4_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DFN4_CAFRO)

HSP 1 Score: 85.1 bits (209), Expect = 8.370e-20
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   16 ELKNSISCVECLNALAYCLGPRHQFASYWREGEFDSCRQRFGELKFCFKLKAANKTELREMAKE 207
            EL++SI C +C+NALA+C  PRHQF  YWR+G FD+C ++F EL+FC+ LK A+  + +EM ++
Sbjct:   19 ELRDSIKCTDCMNALAFCFSPRHQFDLYWRQGTFDTCAKQFEELRFCYSLKTADSAKAKEMLRK 82
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BLAST of mRNA_M-pyrifera_M_contig99986.22994.1 vs. uniprot
Match: A0A176WC03_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WC03_MARPO)

HSP 1 Score: 58.2 bits (139), Expect = 2.050e-9
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   22 KNSISCVECLNALAYCLGPRHQFASYWREGEFDSCRQRFGELKFCFKLKAANKTELREMAKE 207
            K S+SC  C++AL +C  P  Q   Y+REGE DSC++++ EL  C  LK    +E+  + KE
Sbjct:    8 KKSLSCSPCIDALWFCYSPVFQVKQYYREGELDSCKEKWTELFSCISLKTRPASEVEAILKE 69
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99986.22994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8DFN4_CAFRO8.370e-2051.56Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A176WC03_MARPO2.050e-941.94Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99986contigM-pyrifera_M_contig99986:303..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.3088865-CDS-M-pyrifera_M_contig99986:302..3751622816917.3088865-CDS-M-pyrifera_M_contig99986:302..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99986 303..375 +
1692278254.1866426-CDS-M-pyrifera_M_contig99986:302..3751692278254.1866426-CDS-M-pyrifera_M_contig99986:302..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99986 303..375 +
1622816917.325144-CDS-M-pyrifera_M_contig99986:468..6021622816917.325144-CDS-M-pyrifera_M_contig99986:468..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99986 469..602 +
1692278254.1982822-CDS-M-pyrifera_M_contig99986:468..6021692278254.1982822-CDS-M-pyrifera_M_contig99986:468..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99986 469..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99986.22994.1prot_M-pyrifera_M_contig99986.22994.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99986 303..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99986.22994.1

>prot_M-pyrifera_M_contig99986.22994.1 ID=prot_M-pyrifera_M_contig99986.22994.1|Name=mRNA_M-pyrifera_M_contig99986.22994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MDPDSELKNSISCVECLNALAYCLGPRHQFASYWREGEFDSCRQRFGELK
FCFKLKAANKTELREMAKE
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mRNA from alignment at M-pyrifera_M_contig99986:303..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99986.22994.1 ID=mRNA_M-pyrifera_M_contig99986.22994.1|Name=mRNA_M-pyrifera_M_contig99986.22994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig99986:303..602+ (Macrocystis pyrifera P11B4 male)
ATGGATCCTGATTCTGAACTAAAGAACTCCATATCATGTGTAGAGTGCTT
GAATGCACTTGCCTACTGCCTCGGTACACCGAAAAAAACACCCATAACAA
ACCCCACAAGCCTTTTTCCCCCCTTCCCCTTTATCCTCGAACCCTTCCTT
TCCTTCCCACCCACAGGACCAAGGCATCAATTTGCAAGCTATTGGCGAGA
AGGGGAATTTGACTCTTGTAGGCAGCGTTTTGGAGAACTAAAGTTTTGTT
TCAAGCTGAAAGCAGCGAATAAGACAGAGTTGAGAGAAATGGCCAAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99986:303..602+

>mRNA_M-pyrifera_M_contig99986.22994.1 ID=mRNA_M-pyrifera_M_contig99986.22994.1|Name=mRNA_M-pyrifera_M_contig99986.22994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig99986:303..602+ (Macrocystis pyrifera P11B4 male)
ATGGATCCTGATTCTGAACTAAAGAACTCCATATCATGTGTAGAGTGCTT
GAATGCACTTGCCTACTGCCTCGATGGATCCTGATTCTGAACTAAAGAAC
TCCATATCATGTGTAGAGTGCTTGAATGCACTTGCCTACTGCCTCGGACC
AAGGCATCAATTTGCAAGCTATTGGCGAGAAGGGGAATTTGACTCTTGTA
GGCAGCGTTTTGGAGAACTAAAGTTTTGTTTCAAGCTGAAAGCAGCGAAT
AAGACAGAGTTGAGAGAAATGGCCAAAGAAGACCAAGGCATCAATTTGCA
AGCTATTGGCGAGAAGGGGAATTTGACTCTTGTAGGCAGCGTTTTGGAGA
ACTAAAGTTTTGTTTCAAGCTGAAAGCAGCGAATAAGACAGAGTTGAGAG
AAATGGCCAAAGAA
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