mRNA_M-pyrifera_M_contig99978.22989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99978.22989.1
Unique NamemRNA_M-pyrifera_M_contig99978.22989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99978.22989.1 vs. uniprot
Match: A0A812KHN9_9DINO (Gpr137b protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KHN9_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 2.060e-6
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:    1 SALIFLALAVTFMFQAWYLSRMSTEEARRLGIFQPRSLVVTCSCLVVIFVTRVAWDIAAAAGRSFASVALDAHSPSKVARLLVAYIWWEDVPVWILIFVIAGAKV 315
            S +IF  LA  F +  +++  +  ++  R+ + +P S+      L V+FV+R  +D+  AAG    S    A S   VA  + AY+WWE +P+ +L+  IA  +V
Sbjct:  148 SGIIFGFLASAFAWVTYHVLHLEPQQYSRMFMMRPTSVAAVVVVLFVVFVSRAVFDVVTAAGAVTISTGGQA-STEDVAIFVSAYLWWEVLPIVLLLATIAAGRV 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99978.22989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812KHN9_9DINO2.060e-631.43Gpr137b protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99978contigM-pyrifera_M_contig99978:125..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002510.2
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.108814-CDS-M-pyrifera_M_contig99978:124..4691622816917.108814-CDS-M-pyrifera_M_contig99978:124..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99978 125..469 -
1692278254.0963213-CDS-M-pyrifera_M_contig99978:124..4691692278254.0963213-CDS-M-pyrifera_M_contig99978:124..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99978 125..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99978.22989.1prot_M-pyrifera_M_contig99978.22989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99978 125..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99978.22989.1

>prot_M-pyrifera_M_contig99978.22989.1 ID=prot_M-pyrifera_M_contig99978.22989.1|Name=mRNA_M-pyrifera_M_contig99978.22989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
SALIFLALAVTFMFQAWYLSRMSTEEARRLGIFQPRSLVVTCSCLVVIFV
TRVAWDIAAAAGRSFASVALDAHSPSKVARLLVAYIWWEDVPVWILIFVI
AGAKVGDGVRRSGWA
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mRNA from alignment at M-pyrifera_M_contig99978:125..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99978.22989.1 ID=mRNA_M-pyrifera_M_contig99978.22989.1|Name=mRNA_M-pyrifera_M_contig99978.22989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig99978:125..469- (Macrocystis pyrifera P11B4 male)
TCCGCACTCATTTTCCTCGCGCTCGCCGTGACCTTCATGTTCCAGGCATG
GTATCTGAGCCGCATGTCCACCGAGGAGGCCCGGAGACTGGGCATTTTCC
AACCGAGATCTCTCGTGGTCACATGCAGCTGCCTTGTGGTCATTTTCGTG
ACACGAGTGGCCTGGGACATTGCCGCGGCCGCCGGACGCTCCTTCGCGAG
CGTGGCGCTGGATGCGCATTCGCCCTCGAAAGTGGCGAGATTGCTCGTGG
CCTACATTTGGTGGGAGGACGTGCCTGTGTGGATCCTCATTTTCGTCATC
GCCGGGGCCAAGGTCGGAGATGGGGTGCGCAGAAGCGGGTGGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99978:125..469-

>mRNA_M-pyrifera_M_contig99978.22989.1 ID=mRNA_M-pyrifera_M_contig99978.22989.1|Name=mRNA_M-pyrifera_M_contig99978.22989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig99978:125..469- (Macrocystis pyrifera P11B4 male)
TCCGCACTCATTTTCCTCGCGCTCGCCGTGACCTTCATGTTCCAGGCATG
GTATCTGAGCCGCATGTCCACCGAGGAGGCCCGGAGACTGGGCATTTTCC
AACCGAGATCTCTCGTGGTCACATGCAGCTGCCTTGTGGTCATTTTCGTG
ACACGAGTGGCCTGGGACATTGCCGCGGCCGCCGGACGCTCCTTCGCGAG
CGTGGCGCTGGATGCGCATTCGCCCTCGAAAGTGGCGAGATTGCTCGTGG
CCTACATTTGGTGGGAGGACGTGCCTGTGTGGATCCTCATTTTCGTCATC
GCCGGGGCCAAGGTCGGAGATGGGGTGCGCAGAAGCGGGTGGGCCTCCGC
ACTCATTTTCCTCGCGCTCGCCGTGACCTTCATGTTCCAGGCATGGTATC
TGAGCCGCATGTCCACCGAGGAGGCCCGGAGACTGGGCATTTTCCAACCG
AGATCTCTCGTGGTCACATGCAGCTGCCTTGTGGTCATTTTCGTGACACG
AGTGGCCTGGGACATTGCCGCGGCCGCCGGACGCTCCTTCGCGAGCGTGG
CGCTGGATGCGCATTCGCCCTCGAAAGTGGCGAGATTGCTCGTGGCCTAC
ATTTGGTGGGAGGACGTGCCTGTGTGGATCCTCATTTTCGTCATCGCCGG
GGCCAAGGTCGGAGATGGGGTGCGCAGAAGCGGGTGGGCC
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