mRNA_M-pyrifera_M_contig97543.22471.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97543.22471.1
Unique NamemRNA_M-pyrifera_M_contig97543.22471.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig97543.22471.1 vs. uniprot
Match: A0A6A4ZZJ8_9STRA (SAM_MT_RSMB_NOP domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZZJ8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.670e-7
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    1 LHTHPLITRGSLQLQELASALPALAIQHHLLHNPFPLSPWCAIDTCAAPGNKTVQLCEAVHTLQPNPKDSKIQGV 225
            LH HPLI +G L +Q+LAS LP   +      + F      AIDTCAAPGNKT QL  A       PK+ ++Q V
Sbjct:  195 LHGHPLIKKGCLFVQDLASCLPVACLAPQASAHDF------AIDTCAAPGNKTTQL--AAKLALGKPKNRRVQVV 261
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BLAST of mRNA_M-pyrifera_M_contig97543.22471.1 vs. uniprot
Match: A0A024U9Q2_9STRA (SAM_MT_RSMB_NOP domain-containing protein (Fragment) n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9Q2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.140e-7
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    1 LHTHPLITRGSLQLQELASALPALAIQHHLLHNPFPLSPWCAIDTCAAPGNKTVQLCEAVHTLQPNPKDSKIQGV 225
            LH HPLI +G L +Q+LAS LP   +    + +        AIDTCAAPGNKT QL  A       PK  ++Q V
Sbjct:  195 LHGHPLIKKGCLFVQDLASCLPVACVAAQAMDHDV------AIDTCAAPGNKTTQL--AARLALGKPKSRRVQVV 261
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97543.22471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A4ZZJ8_9STRA6.670e-745.33SAM_MT_RSMB_NOP domain-containing protein n=6 Tax=... [more]
A0A024U9Q2_9STRA9.140e-744.00SAM_MT_RSMB_NOP domain-containing protein (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97543contigM-pyrifera_M_contig97543:52..276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.6433253-CDS-M-pyrifera_M_contig97543:51..2761622816892.6433253-CDS-M-pyrifera_M_contig97543:51..276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97543 52..276 -
1692278240.2871764-CDS-M-pyrifera_M_contig97543:51..2761692278240.2871764-CDS-M-pyrifera_M_contig97543:51..276Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97543 52..276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97543.22471.1prot_M-pyrifera_M_contig97543.22471.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97543 52..276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97543.22471.1

>prot_M-pyrifera_M_contig97543.22471.1 ID=prot_M-pyrifera_M_contig97543.22471.1|Name=mRNA_M-pyrifera_M_contig97543.22471.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
LHTHPLITRGSLQLQELASALPALAIQHHLLHNPFPLSPWCAIDTCAAPG
NKTVQLCEAVHTLQPNPKDSKIQGV
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mRNA from alignment at M-pyrifera_M_contig97543:52..276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97543.22471.1 ID=mRNA_M-pyrifera_M_contig97543.22471.1|Name=mRNA_M-pyrifera_M_contig97543.22471.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig97543:52..276- (Macrocystis pyrifera P11B4 male)
CTCCACACCCACCCGCTGATTACACGTGGATCCTTGCAACTGCAAGAACT
AGCTTCTGCACTTCCAGCCCTTGCAATCCAACACCACCTCCTCCACAACC
CGTTCCCTCTATCCCCGTGGTGTGCCATTGACACATGCGCTGCCCCTGGA
AATAAAACCGTACAATTGTGTGAAGCAGTGCATACTCTACAACCCAATCC
CAAAGATTCGAAGATACAAGGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97543:52..276-

>mRNA_M-pyrifera_M_contig97543.22471.1 ID=mRNA_M-pyrifera_M_contig97543.22471.1|Name=mRNA_M-pyrifera_M_contig97543.22471.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig97543:52..276- (Macrocystis pyrifera P11B4 male)
CTCCACACCCACCCGCTGATTACACGTGGATCCTTGCAACTGCAAGAACT
AGCTTCTGCACTTCCAGCCCTTGCAATCCAACACCACCTCCTCCACAACC
CGTTCCCTCTATCCCCGTGGTGTGCCATTGACACATGCGCTGCCCCTGGA
AATAAAACCGTACAATTGTGTGAAGCAGTGCATACTCTACAACCCAATCC
CAAAGATTCGAAGATACAAGGGGTGCTCCACACCCACCCGCTGATTACAC
GTGGATCCTTGCAACTGCAAGAACTAGCTTCTGCACTTCCAGCCCTTGCA
ATCCAACACCACCTCCTCCACAACCCGTTCCCTCTATCCCCGTGGTGTGC
CATTGACACATGCGCTGCCCCTGGAAATAAAACCGTACAATTGTGTGAAG
CAGTGCATACTCTACAACCCAATCCCAAAGATTCGAAGATACAAGGGGTG
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