mRNA_M-pyrifera_M_contig83236.19439.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83236.19439.1
Unique NamemRNA_M-pyrifera_M_contig83236.19439.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83236.19439.1 vs. uniprot
Match: A0A1M5XW04_9BRAD (Transcriptional regulator, MarR family n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5XW04_9BRAD)

HSP 1 Score: 51.6 bits (122), Expect = 6.710e-6
Identity = 33/71 (46.48%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   76 LTFSQVKHLTLIDEGCRGDGCWSLQRLADELTISLPALSKNVSKLAAMGLVEVRQDPFDGRKRRVSLTDLG 288
            L  +Q   L  I E  RG    +LQ LA+ L I + AL+  V  L   GLVE+RQDP DGR +R  LT LG
Sbjct:   37 LKATQAGLLAQIGELARGQEGPTLQDLAERLAIGISALTHAVRPLVRDGLVELRQDPQDGRTKRGILTRLG 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83236.19439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1M5XW04_9BRAD6.710e-646.48Transcriptional regulator, MarR family n=4 Tax=Bra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83236contigM-pyrifera_M_contig83236:6..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.1903095-CDS-M-pyrifera_M_contig83236:5..2931622816739.1903095-CDS-M-pyrifera_M_contig83236:5..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83236 6..293 -
1692278149.700027-CDS-M-pyrifera_M_contig83236:5..2931692278149.700027-CDS-M-pyrifera_M_contig83236:5..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83236 6..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83236.19439.1prot_M-pyrifera_M_contig83236.19439.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83236 6..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83236.19439.1

>prot_M-pyrifera_M_contig83236.19439.1 ID=prot_M-pyrifera_M_contig83236.19439.1|Name=mRNA_M-pyrifera_M_contig83236.19439.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
NLSRLKTEITKILESDCIVPELERPLTFSQVKHLTLIDEGCRGDGCWSLQ
RLADELTISLPALSKNVSKLAAMGLVEVRQDPFDGRKRRVSLTDLG
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mRNA from alignment at M-pyrifera_M_contig83236:6..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83236.19439.1 ID=mRNA_M-pyrifera_M_contig83236.19439.1|Name=mRNA_M-pyrifera_M_contig83236.19439.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig83236:6..293- (Macrocystis pyrifera P11B4 male)
AACCTGTCGCGGCTCAAGACCGAGATCACCAAGATCCTCGAGAGCGACTG
CATCGTGCCGGAGCTCGAGCGGCCGCTGACGTTCTCCCAGGTCAAGCACC
TCACGTTGATCGACGAGGGCTGCCGGGGCGACGGCTGTTGGTCGCTGCAG
CGGCTCGCCGACGAGCTGACGATCAGCTTGCCGGCGCTGAGCAAGAACGT
GTCGAAGCTCGCTGCGATGGGCCTCGTCGAGGTGCGGCAGGATCCCTTCG
ACGGGCGCAAGCGGCGCGTGTCGCTGACCGACCTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83236:6..293-

>mRNA_M-pyrifera_M_contig83236.19439.1 ID=mRNA_M-pyrifera_M_contig83236.19439.1|Name=mRNA_M-pyrifera_M_contig83236.19439.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig83236:6..293- (Macrocystis pyrifera P11B4 male)
AACCTGTCGCGGCTCAAGACCGAGATCACCAAGATCCTCGAGAGCGACTG
CATCGTGCCGGAGCTCGAGCGGCCGCTGACGTTCTCCCAGGTCAAGCACC
TCACGTTGATCGACGAGGGCTGCCGGGGCGACGGCTGTTGGTCGCTGCAG
CGGCTCGCCGACGAGCTGACGATCAGCTTGCCGGCGCTGAGCAAGAACGT
GTCGAAGCTCGCTGCGATGGGCCTCGTCGAGGTGCGGCAGGATCCCTTCG
ACGGGCGCAAGCGGCGCGTGTCGCTGACCGACCTCGGCAACCTGTCGCGG
CTCAAGACCGAGATCACCAAGATCCTCGAGAGCGACTGCATCGTGCCGGA
GCTCGAGCGGCCGCTGACGTTCTCCCAGGTCAAGCACCTCACGTTGATCG
ACGAGGGCTGCCGGGGCGACGGCTGTTGGTCGCTGCAGCGGCTCGCCGAC
GAGCTGACGATCAGCTTGCCGGCGCTGAGCAAGAACGTGTCGAAGCTCGC
TGCGATGGGCCTCGTCGAGGTGCGGCAGGATCCCTTCGACGGGCGCAAGC
GGCGCGTGTCGCTGACCGACCTCGGC
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