prot_M-pyrifera_M_contig83236.19439.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig83236.19439.1
Unique Nameprot_M-pyrifera_M_contig83236.19439.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length96
Homology
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BLAST of mRNA_M-pyrifera_M_contig83236.19439.1 vs. uniprot
Match: A0A1M5XW04_9BRAD (Transcriptional regulator, MarR family n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5XW04_9BRAD)

HSP 1 Score: 51.6 bits (122), Expect = 6.710e-6
Identity = 33/71 (46.48%), Postives = 40/71 (56.34%), Query Frame = 0 
Query:   26 LTFSQVKHLTLIDEGCRGDGCWSLQRLADELTISLPALSKNVSKLAAMGLVEVRQDPFDGRKRRVSLTDLG 96
            L  +Q   L  I E  RG    +LQ LA+ L I + AL+  V  L   GLVE+RQDP DGR +R  LT LG
Sbjct:   37 LKATQAGLLAQIGELARGQEGPTLQDLAERLAIGISALTHAVRPLVRDGLVELRQDPQDGRTKRGILTRLG 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83236.19439.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1M5XW04_9BRAD6.710e-646.48Transcriptional regulator, MarR family n=4 Tax=Bra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..96
e-value: 8.3E-14
score: 53.7
IPR000835MarR-type HTH domainPFAMPF13463HTH_27coord: 26..96
e-value: 1.3E-8
score: 35.2
IPR000835MarR-type HTH domainPROSITEPS50995HTH_MARR_2coord: 1..96
score: 16.151
IPR023187Transcriptional regulator MarR-type, conserved sitePROSITEPS01117HTH_MARR_1coord: 62..96
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 24..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83236contigM-pyrifera_M_contig83236:6..293 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83236.19439.1mRNA_M-pyrifera_M_contig83236.19439.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig83236 6..293 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig83236.19439.1 ID=prot_M-pyrifera_M_contig83236.19439.1|Name=mRNA_M-pyrifera_M_contig83236.19439.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
NLSRLKTEITKILESDCIVPELERPLTFSQVKHLTLIDEGCRGDGCWSLQ
RLADELTISLPALSKNVSKLAAMGLVEVRQDPFDGRKRRVSLTDLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR000835HTH_MarR-typ
IPR023187Tscrpt_reg_MarR-type_CS
IPR036390WH_DNA-bd_sf