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Homology
BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Match: A0A6H5JPW9_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPW9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.190e-20 Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 2 Query: 2 MVSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADSAVDE 154
MVSA F+QFKQRVTFLTPGRDLA+VLEFAKVADLLLVVLPV+QGADSAVDE
Sbjct: 126 MVSAVFHQFKQRVTFLTPGRDLAAVLEFAKVADLLLVVLPVQQGADSAVDE 176
BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Match: A0A835YTY8_9STRA (Bms1-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY8_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.090e-9 Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2 Query: 2 MVSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADSAVDE 154
M + F+Q+KQRVTF+ P R VLE AKVADL+L+VLPV+QG + A+D+
Sbjct: 131 MSTVLFSQYKQRVTFVHPKRSAMDVLELAKVADLVLLVLPVQQGTEHAIDQ 181
BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Match: L8H0X3_ACACA (Bms1-type G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0X3_ACACA) HSP 1 Score: 50.1 bits (118), Expect = 4.480e-5 Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 2 Query: 5 VSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADS 142
++A F FKQR+T RD+ +VL+ AKVAD+LL+V+P + G D+
Sbjct: 124 ITANFPAFKQRMTLFEAPRDIEAVLDIAKVADILLLVIPADGGVDA 169
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 92.8 |
| Seed ortholog evalue | 5.4e-17 |
| Seed eggNOG ortholog | 2880.D7G469 |
| Preferred name | TSR1 |
| KEGG rclass | RC00004,RC00027,RC00627,RC02742,RC02744,RC02882 |
| KEGG ko | ko:K00162,ko:K08741,ko:K14799 |
| KEGG Reaction | R00014,R00209,R01699,R03270 |
| KEGG Pathway | ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230 |
| KEGG Module | M00307 |
| Hectar predicted targeting category | no signal peptide or anchor |
| GOs | GO:0000166,GO:0000461,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0043021,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990904 |
| EggNOG free text desc. | U3 snoRNA binding |
| EggNOG OGs | COG5177@1,KOG1980@2759 |
| EC | 1.2.4.1 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01601,ko00000,ko00001,ko00002,ko01000,ko03009,ko03400 |
| Exons | 1 |
| Model size | 260 |
| Cds size | 168 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816664.0669305-UTR-M-pyrifera_M_contig7648:9183..9184 | 1622816664.0669305-UTR-M-pyrifera_M_contig7648:9183..9184 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7648 9184..9184 + |
| 1692278106.2431834-UTR-M-pyrifera_M_contig7648:9183..9184 | 1692278106.2431834-UTR-M-pyrifera_M_contig7648:9183..9184 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7648 9184..9184 + |
| 1622816664.0931222-UTR-M-pyrifera_M_contig7648:9352..9443 | 1622816664.0931222-UTR-M-pyrifera_M_contig7648:9352..9443 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7648 9353..9443 + |
| 1692278106.269585-UTR-M-pyrifera_M_contig7648:9352..9443 | 1692278106.269585-UTR-M-pyrifera_M_contig7648:9352..9443 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig7648 9353..9443 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816664.0818686-CDS-M-pyrifera_M_contig7648:9184..9352 | 1622816664.0818686-CDS-M-pyrifera_M_contig7648:9184..9352 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7648 9185..9352 + |
| 1692278106.2585087-CDS-M-pyrifera_M_contig7648:9184..9352 | 1692278106.2585087-CDS-M-pyrifera_M_contig7648:9184..9352 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig7648 9185..9352 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7648.18027.1 >prot_M-pyrifera_M_contig7648.18027.1 ID=prot_M-pyrifera_M_contig7648.18027.1|Name=mRNA_M-pyrifera_M_contig7648.18027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MVSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADSAVD
EVTFQ* back to topmRNA from alignment at M-pyrifera_M_contig7648:9184..9443+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig7648.18027.1 ID=mRNA_M-pyrifera_M_contig7648.18027.1|Name=mRNA_M-pyrifera_M_contig7648.18027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=260bp|location=Sequence derived from alignment at M-pyrifera_M_contig7648:9184..9443+ (Macrocystis pyrifera P11B4 male)
AATGGTCAGCGCAGCGTTCAACCAGTTCAAACAACGGGTCACTTTCTTGA
CGCCTGGCCGAGACTTGGCGTCGGTGTTGGAGTTTGCGAAGGTCGCGGAT
CTACTCTTGGTGGTTCTGCCTGTTGAGCAAGGGGCTGACAGTGCTGTAGA
CGAGGTGACATTCCAATGATTGCTATATTCGTGCTTTGCTCGCGTATGAG
ATTGAGAGCCAGCCACCCAACCTTGATGCAGGGATGATGTTATTGTACCT
TGCTTGTCGG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig7648:9184..9443+ >mRNA_M-pyrifera_M_contig7648.18027.1 ID=mRNA_M-pyrifera_M_contig7648.18027.1|Name=mRNA_M-pyrifera_M_contig7648.18027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig7648:9184..9443+ (Macrocystis pyrifera P11B4 male)
ATGGTCAGCGCAGCGTTCAACCAGTTCAAACAACGGGTCACTTTCTTGAC
GCCTGGCCGAGACTTGGCGTCGGTGTTGGAGTTTGCGAAGGTCGCGGATC
TACTCTTGGTGGTTCTGCCTGTTGAGCAAGGGGCTGACAGTGCTGTAGAC
GAGGTGACATTCCAATGAATGGTCAGCGCAGCGTTCAACCAGTTCAAACA
ACGGGTCACTTTCTTGACGCCTGGCCGAGACTTGGCGTCGGTGTTGGAGT
TTGCGAAGGTCGCGGATCTACTCTTGGTGGTTCTGCCTGTTGAGCAAGGG
GCTGACAGTGCTGTAGACGAGGTGACATTCCAATGA back to top
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