mRNA_M-pyrifera_M_contig7648.18027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7648.18027.1
Unique NamemRNA_M-pyrifera_M_contig7648.18027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Match: A0A6H5JPW9_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPW9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.190e-20
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:    2 MVSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADSAVDE 154
            MVSA F+QFKQRVTFLTPGRDLA+VLEFAKVADLLLVVLPV+QGADSAVDE
Sbjct:  126 MVSAVFHQFKQRVTFLTPGRDLAAVLEFAKVADLLLVVLPVQQGADSAVDE 176
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BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Match: A0A835YTY8_9STRA (Bms1-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.090e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:    2 MVSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADSAVDE 154
            M +  F+Q+KQRVTF+ P R    VLE AKVADL+L+VLPV+QG + A+D+
Sbjct:  131 MSTVLFSQYKQRVTFVHPKRSAMDVLELAKVADLVLLVLPVQQGTEHAIDQ 181
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BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Match: L8H0X3_ACACA (Bms1-type G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0X3_ACACA)

HSP 1 Score: 50.1 bits (118), Expect = 4.480e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:    5 VSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADS 142
            ++A F  FKQR+T     RD+ +VL+ AKVAD+LL+V+P + G D+
Sbjct:  124 ITANFPAFKQRMTLFEAPRDIEAVLDIAKVADILLLVIPADGGVDA 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7648.18027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPW9_9PHAE1.190e-2092.16Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835YTY8_9STRA1.090e-956.86Bms1-type G domain-containing protein n=1 Tax=Trib... [more]
L8H0X3_ACACA4.480e-547.83Bms1-type G domain-containing protein n=1 Tax=Acan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7648contigM-pyrifera_M_contig7648:9184..9443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.4e-17
Seed eggNOG ortholog2880.D7G469
Preferred nameTSR1
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K08741,ko:K14799
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000461,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0043021,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U3 snoRNA binding
EggNOG OGsCOG5177@1,KOG1980@2759
EC1.2.4.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03009,ko03400
Exons1
Model size260
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7648.18027.1prot_M-pyrifera_M_contig7648.18027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7648 9185..9352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.0669305-UTR-M-pyrifera_M_contig7648:9183..91841622816664.0669305-UTR-M-pyrifera_M_contig7648:9183..9184Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7648 9184..9184 +
1692278106.2431834-UTR-M-pyrifera_M_contig7648:9183..91841692278106.2431834-UTR-M-pyrifera_M_contig7648:9183..9184Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7648 9184..9184 +
1622816664.0931222-UTR-M-pyrifera_M_contig7648:9352..94431622816664.0931222-UTR-M-pyrifera_M_contig7648:9352..9443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7648 9353..9443 +
1692278106.269585-UTR-M-pyrifera_M_contig7648:9352..94431692278106.269585-UTR-M-pyrifera_M_contig7648:9352..9443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7648 9353..9443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.0818686-CDS-M-pyrifera_M_contig7648:9184..93521622816664.0818686-CDS-M-pyrifera_M_contig7648:9184..9352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7648 9185..9352 +
1692278106.2585087-CDS-M-pyrifera_M_contig7648:9184..93521692278106.2585087-CDS-M-pyrifera_M_contig7648:9184..9352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7648 9185..9352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7648.18027.1

>prot_M-pyrifera_M_contig7648.18027.1 ID=prot_M-pyrifera_M_contig7648.18027.1|Name=mRNA_M-pyrifera_M_contig7648.18027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MVSAAFNQFKQRVTFLTPGRDLASVLEFAKVADLLLVVLPVEQGADSAVD
EVTFQ*
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mRNA from alignment at M-pyrifera_M_contig7648:9184..9443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7648.18027.1 ID=mRNA_M-pyrifera_M_contig7648.18027.1|Name=mRNA_M-pyrifera_M_contig7648.18027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=260bp|location=Sequence derived from alignment at M-pyrifera_M_contig7648:9184..9443+ (Macrocystis pyrifera P11B4 male)
AATGGTCAGCGCAGCGTTCAACCAGTTCAAACAACGGGTCACTTTCTTGA
CGCCTGGCCGAGACTTGGCGTCGGTGTTGGAGTTTGCGAAGGTCGCGGAT
CTACTCTTGGTGGTTCTGCCTGTTGAGCAAGGGGCTGACAGTGCTGTAGA
CGAGGTGACATTCCAATGATTGCTATATTCGTGCTTTGCTCGCGTATGAG
ATTGAGAGCCAGCCACCCAACCTTGATGCAGGGATGATGTTATTGTACCT
TGCTTGTCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7648:9184..9443+

>mRNA_M-pyrifera_M_contig7648.18027.1 ID=mRNA_M-pyrifera_M_contig7648.18027.1|Name=mRNA_M-pyrifera_M_contig7648.18027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig7648:9184..9443+ (Macrocystis pyrifera P11B4 male)
ATGGTCAGCGCAGCGTTCAACCAGTTCAAACAACGGGTCACTTTCTTGAC
GCCTGGCCGAGACTTGGCGTCGGTGTTGGAGTTTGCGAAGGTCGCGGATC
TACTCTTGGTGGTTCTGCCTGTTGAGCAAGGGGCTGACAGTGCTGTAGAC
GAGGTGACATTCCAATGAATGGTCAGCGCAGCGTTCAACCAGTTCAAACA
ACGGGTCACTTTCTTGACGCCTGGCCGAGACTTGGCGTCGGTGTTGGAGT
TTGCGAAGGTCGCGGATCTACTCTTGGTGGTTCTGCCTGTTGAGCAAGGG
GCTGACAGTGCTGTAGACGAGGTGACATTCCAATGA
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