mRNA_M-pyrifera_M_contig76464.18024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76464.18024.1
Unique NamemRNA_M-pyrifera_M_contig76464.18024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76464.18024.1 vs. uniprot
Match: D7FRE9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.330e-9
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 AFGGVTAGTLLATYRGHSVPFYAASMGANYAMGSLAFFG 117
            A  G   GT+LATYRGHSVPFYAASMG NYA+ SLAFFG
Sbjct:   39 ATSGAVFGTVLATYRGHSVPFYAASMGTNYALASLAFFG 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76464.18024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRE9_ECTSI1.330e-976.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76464contigM-pyrifera_M_contig76464:155..271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.9604242-CDS-M-pyrifera_M_contig76464:154..2711622816663.9604242-CDS-M-pyrifera_M_contig76464:154..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76464 155..271 +
1692278106.2062762-CDS-M-pyrifera_M_contig76464:154..2711692278106.2062762-CDS-M-pyrifera_M_contig76464:154..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76464 155..271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76464.18024.1prot_M-pyrifera_M_contig76464.18024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76464 155..271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76464.18024.1

>prot_M-pyrifera_M_contig76464.18024.1 ID=prot_M-pyrifera_M_contig76464.18024.1|Name=mRNA_M-pyrifera_M_contig76464.18024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
AFGGVTAGTLLATYRGHSVPFYAASMGANYAMGSLAFFG
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mRNA from alignment at M-pyrifera_M_contig76464:155..271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76464.18024.1 ID=mRNA_M-pyrifera_M_contig76464.18024.1|Name=mRNA_M-pyrifera_M_contig76464.18024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig76464:155..271+ (Macrocystis pyrifera P11B4 male)
GCCTTCGGGGGCGTGACCGCAGGAACCTTGTTGGCGACTTACCGCGGACA
CTCCGTACCCTTCTACGCGGCGAGCATGGGAGCGAACTACGCGATGGGCT
CGCTCGCATTCTTCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76464:155..271+

>mRNA_M-pyrifera_M_contig76464.18024.1 ID=mRNA_M-pyrifera_M_contig76464.18024.1|Name=mRNA_M-pyrifera_M_contig76464.18024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig76464:155..271+ (Macrocystis pyrifera P11B4 male)
GCCTTCGGGGGCGTGACCGCAGGAACCTTGTTGGCGACTTACCGCGGACA
CTCCGTACCCTTCTACGCGGCGAGCATGGGAGCGAACTACGCGATGGGCT
CGCTCGCATTCTTCGGTGCCTTCGGGGGCGTGACCGCAGGAACCTTGTTG
GCGACTTACCGCGGACACTCCGTACCCTTCTACGCGGCGAGCATGGGAGC
GAACTACGCGATGGGCTCGCTCGCATTCTTCGGT
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