mRNA_M-pyrifera_M_contig76398.18010.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76398.18010.1
Unique NamemRNA_M-pyrifera_M_contig76398.18010.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76398.18010.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.240e-15
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 ETRRFVPTVVMRGSYPIRAVGFSPDGGLFAAGSNDRALRVCRTPTEAEL 147
            E  RF PT+++ GS+P+R+VGFS DGGLFA G NDR LRVC+TP+EAEL
Sbjct:  703 EASRFFPTILVSGSHPVRSVGFSADGGLFAVGCNDRTLRVCKTPSEAEL 751
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76398.18010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR8_ECTSI2.240e-1567.35CTLH domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76398contigM-pyrifera_M_contig76398:305..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue8.4e-09
Seed eggNOG ortholog2880.D8LHR8
Preferred nameWDR47
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGsKOG0641@1,KOG0641@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.3033278-UTR-M-pyrifera_M_contig76398:304..3341622816663.3033278-UTR-M-pyrifera_M_contig76398:304..334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76398 305..334 +
1692278105.781957-UTR-M-pyrifera_M_contig76398:304..3341692278105.781957-UTR-M-pyrifera_M_contig76398:304..334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76398 305..334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.3176448-CDS-M-pyrifera_M_contig76398:334..4511622816663.3176448-CDS-M-pyrifera_M_contig76398:334..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76398 335..451 +
1692278105.7941623-CDS-M-pyrifera_M_contig76398:334..4511692278105.7941623-CDS-M-pyrifera_M_contig76398:334..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76398 335..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76398.18010.1prot_M-pyrifera_M_contig76398.18010.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76398 335..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76398.18010.1

>prot_M-pyrifera_M_contig76398.18010.1 ID=prot_M-pyrifera_M_contig76398.18010.1|Name=mRNA_M-pyrifera_M_contig76398.18010.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
MRGSYPIRAVGFSPDGGLFAAGSNDRALRVCRTPTEAEL
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mRNA from alignment at M-pyrifera_M_contig76398:305..451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76398.18010.1 ID=mRNA_M-pyrifera_M_contig76398.18010.1|Name=mRNA_M-pyrifera_M_contig76398.18010.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig76398:305..451+ (Macrocystis pyrifera P11B4 male)
GAAACGCGCAGGTTCGTCCCGACGGTGGTGATGAGGGGGTCGTATCCCAT
AAGGGCGGTGGGCTTCTCTCCGGACGGCGGACTGTTCGCCGCCGGGAGTA
ACGACCGCGCGCTCAGGGTCTGCCGCACCCCGACGGAGGCCGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76398:305..451+

>mRNA_M-pyrifera_M_contig76398.18010.1 ID=mRNA_M-pyrifera_M_contig76398.18010.1|Name=mRNA_M-pyrifera_M_contig76398.18010.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig76398:305..451+ (Macrocystis pyrifera P11B4 male)
ATGAGGGGGTCGTATCCCATAAGGGCGGTGGGCTTCTCTCCGGACGGCGG
ACTGTTCGCCGCCGGGAGTAACGACCGCGCGCTCAGGGTCTGCCGCACCC
CGACGGAGGCCGAGCTGATGAGGGGGTCGTATCCCATAAGGGCGGTGGGC
TTCTCTCCGGACGGCGGACTGTTCGCCGCCGGGAGTAACGACCGCGCGCT
CAGGGTCTGCCGCACCCCGACGGAGGCCGAGCTG
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