mRNA_M-pyrifera_M_contig128473.5726.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig128473.5726.1
Unique NamemRNA_M-pyrifera_M_contig128473.5726.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig128473.5726.1 vs. uniprot
Match: A0A7S2STD2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STD2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.900e-16
Identity = 49/143 (34.27%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 VVLLAGASLGMYVGAETGYGSFLTAYMHLKFGYKEAVGQEMSSGFWGAVAAGRLASIWVARVWSPKKMLVVATGGLFVCSVLAVVAGYATYSGHEAASGVFWAISLLIGASMSCIFPATLSLADAYAPLQGKHTTAIVVGAAL 429
            +V LA A LG+YVGAETG+G ++  Y H + G+ +A GQ ++  FWG++AAGR+ +I ++   +P   L      L V +V   +AG      +    GV W  + L G  M+ ++P  +S  + +  + G+ ++ +VVGAA+
Sbjct:  241 IVALAAAILGLYVGAETGFGGYVLFYAHRRLGFSQAKGQYLTGVFWGSLAAGRILAIPLSLRLAPAHQLY---ADLLVSTV--AMAGIVMLWRYR---GVLWFCTGLFGLGMASVYPTVMSFVEEFINVTGRISSTLVVGAAI 375          
BLAST of mRNA_M-pyrifera_M_contig128473.5726.1 vs. uniprot
Match: A0A2V0PBW4_9CHLO (MFS transporter n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PBW4_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-6
Identity = 43/137 (31.39%), Postives = 65/137 (47.45%), Query Frame = 1
Query:    1 VVLLAGASLGMYVGAETGYGSFLTAYMHLKFGYKEAVGQEMSSGFWGAVAAGRLASIWVARVWSPKKMLVVATGGLFVCSVLAVVAGYATYSGHEAASGVFWAISL---LIGASMSCIFPATLSLADAYAPLQGKHT 402
            V+L A A + + VG E G+G + T Y     G  E+ G  ++S +WGA  AGR+A+   A V  P  +L        + S+   VAG A       A    W  ++   L+G  +S  F   L+L + +AP+ G  T
Sbjct:  249 VLLPAAAFVFLSVGLEVGFGGWTTVYGTRYLGESESAGHALTSAYWGAFTAGRIAASAAAAVAPPATLL--------LASMPLAVAGAAAALALPPAVLAGWPATVCVVLVGLGLSTGFANLLALLEVHAPINGSVT 377          
BLAST of mRNA_M-pyrifera_M_contig128473.5726.1 vs. uniprot
Match: UPI001E1D8959 (sodium-dependent glucose transporter 1A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D8959)

HSP 1 Score: 53.5 bits (127), Expect = 1.640e-5
Identity = 34/130 (26.15%), Postives = 64/130 (49.23%), Query Frame = 1
Query:   40 GAETGYGSFLTAYMHLKFGYKEAVGQEMSSGFWGAVAAGRLASIWVARVWSPKKMLVVATGGLFVCSVLAVVAGYATYSGHEAASGVFWAISLLIGASMSCIFPATLSLADAYAPLQGKHTTAIVVGAAL 429
            G E   G F+ AY   + G+  A G  +++ FW + A GR+     AR    + ++++ TGG+FVCSVL  +     ++G  A +   W +   +    +  FP+ +   D +  + G   T +++G ++
Sbjct:  319 GGERILGKFIRAYSIEQLGFSVADGSYINTTFWISFAIGRITGFVTARYIPIRILILIETGGVFVCSVLLCI-----FAGDNATA--LWVLIQPLAVFHAPCFPSGIGWGDYHVEMTGMAITFLLLGGSI 441          
BLAST of mRNA_M-pyrifera_M_contig128473.5726.1 vs. uniprot
Match: A0A7C5BU03_9BACT (MFS transporter n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C5BU03_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.240e-5
Identity = 39/141 (27.66%), Postives = 65/141 (46.10%), Query Frame = 1
Query:    1 VVLLAGASLGMYVGAETGYGSFLTAYMHLKFGYKEAVGQEMSSGFWGAVAAGRLASIWVARVWSPKKMLVVATGGLFVCSVLAVVAGYATYSGHEAASGVFWAISLLIGASMSCIFPATLSLADAYAPLQGKHTTAIVVGA 423
            +VL     + +YVGAE+G GS+L AY       K  V     + FW  +  GR  + W A+  S   ++ +A  G  +     ++ G           G+   +  L+G +++ ++P T+S A A  P+Q     +IVV A
Sbjct:  350 LVLALSFGILLYVGAESGQGSWLAAYFRQNLHSKGPVAAATVAMFWAGIGLGRAITTWTAKHLSDYTIICIALTGATIFQSALLLVG-------SPVPGLV--LVPLLGFALAPVWPTTISRASAQHPMQTGSVLSIVVAA 481          
BLAST of mRNA_M-pyrifera_M_contig128473.5726.1 vs. uniprot
Match: A0A7V4XBC5_9BACT (MFS transporter n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4XBC5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 5.290e-5
Identity = 39/141 (27.66%), Postives = 62/141 (43.97%), Query Frame = 1
Query:    1 VVLLAGASLGMYVGAETGYGSFLTAYMHLKFGYKEAVGQEMSSGFWGAVAAGRLASIWVARVWSPKKMLVVATGGLFVCSVLAVVAGYATYSGHEAASGVFWAISLLIGASMSCIFPATLSLADAYAPLQGKHTTAIVVGA 423
            +VLL    + +YVGAE+G GS++  Y          V     + FW  + AGR A+ W +R  S   ++ ++     +C    +V        H    G+  A   L+G  ++ ++P  LS A    P+Q      IVV A
Sbjct:  213 MVLLLSLGILLYVGAESGQGSWIALYFKKGLQAAGPVAAASVAFFWAGIGAGRFAATWTSRRLSNYALICISLAFAAICQAALLVV-------HSPVVGL--ATVPLLGFGLAPVWPTILSCAGDEHPMQSGTVFGIVVAA 344          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig128473.5726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2STD2_9STRA4.900e-1634.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2V0PBW4_9CHLO1.010e-631.39MFS transporter n=1 Tax=Raphidocelis subcapitata T... [more]
UPI001E1D89591.640e-526.15sodium-dependent glucose transporter 1A-like n=1 T... [more]
A0A7C5BU03_9BACT2.240e-527.66MFS transporter n=1 Tax=Armatimonadetes bacterium ... [more]
A0A7V4XBC5_9BACT5.290e-527.66MFS transporter n=1 Tax=Armatimonadetes bacterium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig128473contigM-pyrifera_M_contig128473:73..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score70.9
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog79684.XP_005363603.1
KEGG koko:K08175
KEGG TC2.A.1.7
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005355,GO:0006810,GO:0008150,GO:0008643,GO:0008645,GO:0015144,GO:0015145,GO:0015149,GO:0015749,GO:0022857,GO:0034219,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:1904659
EggNOG free text desc.sodium-dependent glucose transporter
EggNOG OGs28Z0Q@1,2R5UW@2759,35QW1@314146,38BCW@33154,3BHS8@33208,3D1D3@33213,3J2M1@40674,4846H@7711,48X24@7742,4Q8BU@9989
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size429
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.925918-UTR-M-pyrifera_M_contig128473:72..1021622815797.925918-UTR-M-pyrifera_M_contig128473:72..102Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128473 73..102 +
1692277574.284628-UTR-M-pyrifera_M_contig128473:72..1021692277574.284628-UTR-M-pyrifera_M_contig128473:72..102Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig128473 73..102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815797.945541-CDS-M-pyrifera_M_contig128473:102..5011622815797.945541-CDS-M-pyrifera_M_contig128473:102..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128473 103..501 +
1692277574.2959023-CDS-M-pyrifera_M_contig128473:102..5011692277574.2959023-CDS-M-pyrifera_M_contig128473:102..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig128473 103..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig128473.5726.1prot_M-pyrifera_M_contig128473.5726.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig128473 103..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig128473.5726.1

>prot_M-pyrifera_M_contig128473.5726.1 ID=prot_M-pyrifera_M_contig128473.5726.1|Name=mRNA_M-pyrifera_M_contig128473.5726.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MYVGAETGYGSFLTAYMHLKFGYKEAVGQEMSSGFWGAVAAGRLASIWVA
RVWSPKKMLVVATGGLFVCSVLAVVAGYATYSGHEAASGVFWAISLLIGA
SMSCIFPATLSLADAYAPLQGKHTTAIVVGAAL
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mRNA from alignment at M-pyrifera_M_contig128473:73..501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig128473.5726.1 ID=mRNA_M-pyrifera_M_contig128473.5726.1|Name=mRNA_M-pyrifera_M_contig128473.5726.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig128473:73..501+ (Macrocystis pyrifera P11B4 male)
GTGGTGTTGTTGGCTGGCGCTTCGCTTGGGATGTATGTGGGTGCGGAGAC TGGGTATGGCAGTTTCTTGACTGCATATATGCACCTCAAGTTTGGGTACA AGGAGGCGGTTGGGCAGGAGATGTCTTCTGGGTTTTGGGGTGCGGTGGCG GCAGGGAGGCTTGCGAGCATTTGGGTGGCTCGTGTGTGGTCTCCAAAGAA GATGTTGGTGGTGGCCACTGGAGGGCTCTTCGTGTGCTCTGTGCTGGCGG TGGTGGCGGGGTATGCAACCTATTCTGGCCACGAAGCCGCTTCTGGAGTC TTCTGGGCCATTTCTCTGCTCATCGGAGCCTCCATGTCGTGTATCTTCCC GGCCACCCTCTCCCTCGCTGATGCATATGCCCCGCTGCAAGGAAAACACA CCACAGCCATCGTCGTTGGCGCCGCACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig128473:73..501+

>mRNA_M-pyrifera_M_contig128473.5726.1 ID=mRNA_M-pyrifera_M_contig128473.5726.1|Name=mRNA_M-pyrifera_M_contig128473.5726.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig128473:73..501+ (Macrocystis pyrifera P11B4 male)
ATGTATGTGGGTGCGGAGACTGGGTATGGCAGTTTCTTGACTGCATATAT
GCACCTCAAGTTTGGGTACAAGGAGGCGGTTGGGCAGGAGATGTCTTCTG
GGTTTTGGGGTGCGGTGGCGGCAGGGAGGCTTGCGAGCATTTGGGTGGCT
CGTGTGTGGTCTCCAAAGAAGATGTTGGTGGTGGCCACTGGAGGGCTCTT
CGTGTGCTCTGTGCTGGCGGTGGTGGCGGGGTATGCAACCTATTCTGGCC
ACGAAGCCGCTTCTGGAGTCTTCTGGGCCATTTCTCTGCTCATCGGAGCC
TCCATGTCGTGTATCTTCCCGGCCACCCTCTCCCTCGCTGATGCATATGC
CCCGCTGCAAGGAAAACACACCACAGCCATCGTCGTTGGCGCCGCACTTA
TGTATGTGGGTGCGGAGACTGGGTATGGCAGTTTCTTGACTGCATATATG
CACCTCAAGTTTGGGTACAAGGAGGCGGTTGGGCAGGAGATGTCTTCTGG
GTTTTGGGGTGCGGTGGCGGCAGGGAGGCTTGCGAGCATTTGGGTGGCTC
GTGTGTGGTCTCCAAAGAAGATGTTGGTGGTGGCCACTGGAGGGCTCTTC
GTGTGCTCTGTGCTGGCGGTGGTGGCGGGGTATGCAACCTATTCTGGCCA
CGAAGCCGCTTCTGGAGTCTTCTGGGCCATTTCTCTGCTCATCGGAGCCT
CCATGTCGTGTATCTTCCCGGCCACCCTCTCCCTCGCTGATGCATATGCC
CCGCTGCAAGGAAAACACACCACAGCCATCGTCGTTGGCGCCGCACTT
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