mRNA_M-pyrifera_M_contig127336.5504.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A2E7KDF4_9PLAN (PadR family transcriptional regulator n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KDF4_9PLAN) HSP 1 Score: 169 bits (427), Expect = 2.780e-51 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 261
LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAEN RKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA
Sbjct: 34 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENGRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 120
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A6C2L2_9PLAN (Transcriptional regulator, PadR-like family protein n=5 Tax=Gimesia TaxID=1649453 RepID=A6C2L2_9PLAN) HSP 1 Score: 152 bits (384), Expect = 9.530e-45 Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 261
LSEQTGG+L+MGQSTLYPLLYNL+SQGLIRPSWQ +E+ RKRKYYSLTAKGKKRLA+DTAQW AVTSAMQSLGILSG QPKL+GGEA
Sbjct: 34 LSEQTGGILDMGQSTLYPLLYNLQSQGLIRPSWQESESGRKRKYYSLTAKGKKRLASDTAQWGAVTSAMQSLGILSGTQPKLRGGEA 120
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A2E7KEY2_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEY2_9PLAN) HSP 1 Score: 165 bits (418), Expect = 1.520e-44 Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 3
Query: 261 MKANSAQQTGWKKVLQTPLSDLLCGRVTGRQEPLGRLDTGTLSAPLIDSIRSVTEQLQGYFRWRVARRLVQSCRMLVQEGC 503
MKANSAQQTGWKKVL+TPLSDLLCGRVTGRQEPLGRLDTGTLSAPLIDSIRSVTEQLQGYFRWRVARRLVQSCRMLVQEGC
Sbjct: 1 MKANSAQQTGWKKVLETPLSDLLCGRVTGRQEPLGRLDTGTLSAPLIDSIRSVTEQLQGYFRWRVARRLVQSCRMLVQEGC 81
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A350K7U5_9PLAN (PadR family transcriptional regulator (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K7U5_9PLAN) HSP 1 Score: 141 bits (355), Expect = 7.430e-41 Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 1
Query: 19 GVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 261
GVL+MGQSTLYPLLYNL+SQGLIRPSWQ +E+ RKRKYYSLTAKGKKRLA+DTAQW AVTSAMQSLGILSG QPKL+GGEA
Sbjct: 1 GVLDMGQSTLYPLLYNLQSQGLIRPSWQESESGRKRKYYSLTAKGKKRLASDTAQWGAVTSAMQSLGILSGTQPKLRGGEA 81
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A517VNL7_9PLAN (Lineage-specific thermal regulator protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VNL7_9PLAN) HSP 1 Score: 141 bits (356), Expect = 1.700e-40 Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGE 258
LSEQTGGVL+MGQSTLYPLLYNL+SQGLIRPSWQ +++ RKRKYYSLTAKGKKRLA+DTAQW+AV +AMQSLG+L A P+L+GGE
Sbjct: 34 LSEQTGGVLDMGQSTLYPLLYNLQSQGLIRPSWQESDSGRKRKYYSLTAKGKKRLASDTAQWMAVATAMQSLGVLPTAPPRLRGGE 119
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A3R7RXZ7_9BACT (PadR family transcriptional regulator n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A3R7RXZ7_9BACT) HSP 1 Score: 100 bits (248), Expect = 3.710e-24 Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSG 231
L+E+T G L MGQSTLYPLLYNLE++GL+R + AEN R RKYY++T KG+ RLA D QW AVT AMQ+LG++SG
Sbjct: 34 LTERTEGTLEMGQSTLYPLLYNLEAKGLVRSERRVAENGRTRKYYAITGKGETRLAXDXXQWQAVTDAMQTLGVVSG 110
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A3D3R5R2_9PLAN (PadR family transcriptional regulator (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R5R2_9PLAN) HSP 1 Score: 99.0 bits (245), Expect = 4.380e-24 Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLA 168
LSEQT GVL+MGQSTLYPLLYNL+SQGLIRPSWQ +E+ RKRKYYSLTAKGKKRLA
Sbjct: 34 LSEQTSGVLDMGQSTLYPLLYNLQSQGLIRPSWQESESGRKRKYYSLTAKGKKRLA 89
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: UPI00198C194E (Helix-turn-helix transcriptional regulator n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI00198C194E) HSP 1 Score: 99.4 bits (246), Expect = 7.850e-24 Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQ--GGEA 261
L+++T GVL MGQSTLYPLLYNLE++GLI+ W AAE+ R+R+YYSLT KG+KRL D +W A+ SAM +LGI+S + L GG A
Sbjct: 34 LAQRTSGVLAMGQSTLYPLLYNLEAKGLIQSRWLAAESGRERRYYSLTGKGRKRLKEDCERWSALASAMAALGIVSPGRATLAAAGGAA 122
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A7S6MET9_9BACT (Helix-turn-helix transcriptional regulator n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7S6MET9_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 1.760e-23 Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSG 231
L QT GVL MGQSTLYPLLYNLE++ LI SW+ A++ R RKYY+LTAKGKK LA +T QW V AM SLG+L+G
Sbjct: 34 LDSQTQGVLAMGQSTLYPLLYNLEAKRLIAGSWREADSGRPRKYYALTAKGKKHLAGETRQWRQVAQAMTSLGVLTG 110
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A3B1DFS7_9ZZZZ (Transcriptional regulator, PadR family n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DFS7_9ZZZZ) HSP 1 Score: 98.2 bits (243), Expect = 2.160e-23 Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQP-KLQGGEA 261
L +T GVL MGQSTLYPLLYNLE++GLI SW+ +N R+RKYY LT KGKK+L DT QW + AMQ++G+L+ + L GG A
Sbjct: 34 LDARTDGVLAMGQSTLYPLLYNLEAKGLIEASWRETDNGRERKYYRLTGKGKKKLKADTEQWNRLAGAMQAIGVLNSPKAGHLAGGSA 121 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127336.5504.1 >prot_M-pyrifera_M_contig127336.5504.1 ID=prot_M-pyrifera_M_contig127336.5504.1|Name=mRNA_M-pyrifera_M_contig127336.5504.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp MGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAback to top mRNA from alignment at M-pyrifera_M_contig127336:3..505+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127336.5504.1 ID=mRNA_M-pyrifera_M_contig127336.5504.1|Name=mRNA_M-pyrifera_M_contig127336.5504.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=503bp|location=Sequence derived from alignment at M-pyrifera_M_contig127336:3..505+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127336:3..505+ >mRNA_M-pyrifera_M_contig127336.5504.1 ID=mRNA_M-pyrifera_M_contig127336.5504.1|Name=mRNA_M-pyrifera_M_contig127336.5504.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig127336:3..505+ (Macrocystis pyrifera P11B4 male)back to top |