mRNA_M-pyrifera_M_contig127336.5504.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127336.5504.1
Unique NamemRNA_M-pyrifera_M_contig127336.5504.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A2E7KDF4_9PLAN (PadR family transcriptional regulator n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KDF4_9PLAN)

HSP 1 Score: 169 bits (427), Expect = 2.780e-51
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 261
            LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAEN RKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA
Sbjct:   34 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENGRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 120          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A6C2L2_9PLAN (Transcriptional regulator, PadR-like family protein n=5 Tax=Gimesia TaxID=1649453 RepID=A6C2L2_9PLAN)

HSP 1 Score: 152 bits (384), Expect = 9.530e-45
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 261
            LSEQTGG+L+MGQSTLYPLLYNL+SQGLIRPSWQ +E+ RKRKYYSLTAKGKKRLA+DTAQW AVTSAMQSLGILSG QPKL+GGEA
Sbjct:   34 LSEQTGGILDMGQSTLYPLLYNLQSQGLIRPSWQESESGRKRKYYSLTAKGKKRLASDTAQWGAVTSAMQSLGILSGTQPKLRGGEA 120          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A2E7KEY2_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEY2_9PLAN)

HSP 1 Score: 165 bits (418), Expect = 1.520e-44
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 3
Query:  261 MKANSAQQTGWKKVLQTPLSDLLCGRVTGRQEPLGRLDTGTLSAPLIDSIRSVTEQLQGYFRWRVARRLVQSCRMLVQEGC 503
            MKANSAQQTGWKKVL+TPLSDLLCGRVTGRQEPLGRLDTGTLSAPLIDSIRSVTEQLQGYFRWRVARRLVQSCRMLVQEGC
Sbjct:    1 MKANSAQQTGWKKVLETPLSDLLCGRVTGRQEPLGRLDTGTLSAPLIDSIRSVTEQLQGYFRWRVARRLVQSCRMLVQEGC 81          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A350K7U5_9PLAN (PadR family transcriptional regulator (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K7U5_9PLAN)

HSP 1 Score: 141 bits (355), Expect = 7.430e-41
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 1
Query:   19 GVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGEA 261
            GVL+MGQSTLYPLLYNL+SQGLIRPSWQ +E+ RKRKYYSLTAKGKKRLA+DTAQW AVTSAMQSLGILSG QPKL+GGEA
Sbjct:    1 GVLDMGQSTLYPLLYNLQSQGLIRPSWQESESGRKRKYYSLTAKGKKRLASDTAQWGAVTSAMQSLGILSGTQPKLRGGEA 81          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A517VNL7_9PLAN (Lineage-specific thermal regulator protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VNL7_9PLAN)

HSP 1 Score: 141 bits (356), Expect = 1.700e-40
Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQGGE 258
            LSEQTGGVL+MGQSTLYPLLYNL+SQGLIRPSWQ +++ RKRKYYSLTAKGKKRLA+DTAQW+AV +AMQSLG+L  A P+L+GGE
Sbjct:   34 LSEQTGGVLDMGQSTLYPLLYNLQSQGLIRPSWQESDSGRKRKYYSLTAKGKKRLASDTAQWMAVATAMQSLGVLPTAPPRLRGGE 119          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A3R7RXZ7_9BACT (PadR family transcriptional regulator n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A3R7RXZ7_9BACT)

HSP 1 Score: 100 bits (248), Expect = 3.710e-24
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSG 231
            L+E+T G L MGQSTLYPLLYNLE++GL+R   + AEN R RKYY++T KG+ RLA D  QW AVT AMQ+LG++SG
Sbjct:   34 LTERTEGTLEMGQSTLYPLLYNLEAKGLVRSERRVAENGRTRKYYAITGKGETRLAXDXXQWQAVTDAMQTLGVVSG 110          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A3D3R5R2_9PLAN (PadR family transcriptional regulator (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R5R2_9PLAN)

HSP 1 Score: 99.0 bits (245), Expect = 4.380e-24
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLA 168
            LSEQT GVL+MGQSTLYPLLYNL+SQGLIRPSWQ +E+ RKRKYYSLTAKGKKRLA
Sbjct:   34 LSEQTSGVLDMGQSTLYPLLYNLQSQGLIRPSWQESESGRKRKYYSLTAKGKKRLA 89          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: UPI00198C194E (Helix-turn-helix transcriptional regulator n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI00198C194E)

HSP 1 Score: 99.4 bits (246), Expect = 7.850e-24
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQPKLQ--GGEA 261
            L+++T GVL MGQSTLYPLLYNLE++GLI+  W AAE+ R+R+YYSLT KG+KRL  D  +W A+ SAM +LGI+S  +  L   GG A
Sbjct:   34 LAQRTSGVLAMGQSTLYPLLYNLEAKGLIQSRWLAAESGRERRYYSLTGKGRKRLKEDCERWSALASAMAALGIVSPGRATLAAAGGAA 122          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A7S6MET9_9BACT (Helix-turn-helix transcriptional regulator n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7S6MET9_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 1.760e-23
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSG 231
            L  QT GVL MGQSTLYPLLYNLE++ LI  SW+ A++ R RKYY+LTAKGKK LA +T QW  V  AM SLG+L+G
Sbjct:   34 LDSQTQGVLAMGQSTLYPLLYNLEAKRLIAGSWREADSGRPRKYYALTAKGKKHLAGETRQWRQVAQAMTSLGVLTG 110          
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Match: A0A3B1DFS7_9ZZZZ (Transcriptional regulator, PadR family n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DFS7_9ZZZZ)

HSP 1 Score: 98.2 bits (243), Expect = 2.160e-23
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 LSEQTGGVLNMGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTAQWIAVTSAMQSLGILSGAQP-KLQGGEA 261
            L  +T GVL MGQSTLYPLLYNLE++GLI  SW+  +N R+RKYY LT KGKK+L  DT QW  +  AMQ++G+L+  +   L GG A
Sbjct:   34 LDARTDGVLAMGQSTLYPLLYNLEAKGLIEASWRETDNGRERKYYRLTGKGKKKLKADTEQWNRLAGAMQAIGVLNSPKAGHLAGGSA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127336.5504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KDF4_9PLAN2.780e-5198.85PadR family transcriptional regulator n=6 Tax=Gime... [more]
A6C2L2_9PLAN9.530e-4587.36Transcriptional regulator, PadR-like family protei... [more]
A0A2E7KEY2_9PLAN1.520e-4498.77Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A350K7U5_9PLAN7.430e-4187.65PadR family transcriptional regulator (Fragment) n... [more]
A0A517VNL7_9PLAN1.700e-4080.23Lineage-specific thermal regulator protein n=1 Tax... [more]
A0A3R7RXZ7_9BACT3.710e-2463.64PadR family transcriptional regulator n=1 Tax=Phyc... [more]
A0A3D3R5R2_9PLAN4.380e-2487.50PadR family transcriptional regulator (Fragment) n... [more]
UPI00198C194E7.850e-2458.43Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A7S6MET9_9BACT1.760e-2364.94Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A3B1DFS7_9ZZZZ2.160e-2356.82Transcriptional regulator, PadR family n=1 Tax=hyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127336contigM-pyrifera_M_contig127336:3..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score135.6
Seed ortholog evalue1e-29
Seed eggNOG ortholog344747.PM8797T_09134
KEGG koko:K10947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcriptional regulator PadR-like family
EggNOG OGs2J1J6@203682,COG1695@1,COG1695@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size503
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127336.5504.1prot_M-pyrifera_M_contig127336.5504.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127336 33..266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.398846-UTR-M-pyrifera_M_contig127336:2..321622815787.398846-UTR-M-pyrifera_M_contig127336:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127336 3..32 +
1692277569.4154513-UTR-M-pyrifera_M_contig127336:2..321692277569.4154513-UTR-M-pyrifera_M_contig127336:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127336 3..32 +
1622815787.422514-UTR-M-pyrifera_M_contig127336:266..5051622815787.422514-UTR-M-pyrifera_M_contig127336:266..505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127336 267..505 +
1692277569.4376109-UTR-M-pyrifera_M_contig127336:266..5051692277569.4376109-UTR-M-pyrifera_M_contig127336:266..505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127336 267..505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.4124205-CDS-M-pyrifera_M_contig127336:32..2661622815787.4124205-CDS-M-pyrifera_M_contig127336:32..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127336 33..266 +
1692277569.4275627-CDS-M-pyrifera_M_contig127336:32..2661692277569.4275627-CDS-M-pyrifera_M_contig127336:32..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127336 33..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127336.5504.1

>prot_M-pyrifera_M_contig127336.5504.1 ID=prot_M-pyrifera_M_contig127336.5504.1|Name=mRNA_M-pyrifera_M_contig127336.5504.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MGQSTLYPLLYNLESQGLIRPSWQAAENVRKRKYYSLTAKGKKRLANDTA
QWIAVTSAMQSLGILSGAQPKLQGGEA*
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mRNA from alignment at M-pyrifera_M_contig127336:3..505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127336.5504.1 ID=mRNA_M-pyrifera_M_contig127336.5504.1|Name=mRNA_M-pyrifera_M_contig127336.5504.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=503bp|location=Sequence derived from alignment at M-pyrifera_M_contig127336:3..505+ (Macrocystis pyrifera P11B4 male)
CTGTCGGAGCAGACGGGGGGCGTGCTCAACATGGGGCAGTCGACTCTTTA TCCGTTGTTGTACAACCTGGAGTCCCAAGGATTGATTCGCCCCAGCTGGC AGGCAGCAGAGAACGTCCGCAAGCGGAAATACTATTCGCTGACCGCCAAA GGTAAGAAGCGGCTGGCGAACGATACGGCCCAGTGGATTGCCGTCACGAG TGCAATGCAGAGCCTGGGAATTCTGTCCGGCGCACAACCGAAGCTGCAGG GGGGTGAAGCATGAAGGCGAACAGTGCTCAACAGACTGGCTGGAAAAAGG TGTTGCAGACGCCGCTTTCCGATCTGCTATGCGGTCGGGTGACGGGCCGC CAGGAACCACTGGGGCGACTGGATACGGGGACATTGTCTGCGCCACTGAT AGACTCAATTCGGAGTGTGACGGAGCAGTTACAGGGTTATTTTCGCTGGA GAGTAGCTCGGCGTCTGGTCCAATCCTGTCGAATGCTGGTTCAGGAAGGT TGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127336:3..505+

>mRNA_M-pyrifera_M_contig127336.5504.1 ID=mRNA_M-pyrifera_M_contig127336.5504.1|Name=mRNA_M-pyrifera_M_contig127336.5504.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig127336:3..505+ (Macrocystis pyrifera P11B4 male)
ATGGGGCAGTCGACTCTTTATCCGTTGTTGTACAACCTGGAGTCCCAAGG
ATTGATTCGCCCCAGCTGGCAGGCAGCAGAGAACGTCCGCAAGCGGAAAT
ACTATTCGCTGACCGCCAAAGGTAAGAAGCGGCTGGCGAACGATACGGCC
CAGTGGATTGCCGTCACGAGTGCAATGCAGAGCCTGGGAATTCTGTCCGG
CGCACAACCGAAGCTGCAGGGGGGTGAAGCATGAATGGGGCAGTCGACTC
TTTATCCGTTGTTGTACAACCTGGAGTCCCAAGGATTGATTCGCCCCAGC
TGGCAGGCAGCAGAGAACGTCCGCAAGCGGAAATACTATTCGCTGACCGC
CAAAGGTAAGAAGCGGCTGGCGAACGATACGGCCCAGTGGATTGCCGTCA
CGAGTGCAATGCAGAGCCTGGGAATTCTGTCCGGCGCACAACCGAAGCTG
CAGGGGGGTGAAGCATGA
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