prot_M-pyrifera_M_contig88346.20521.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88346.20521.1
Unique Nameprot_M-pyrifera_M_contig88346.20521.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length85
Homology
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BLAST of mRNA_M-pyrifera_M_contig88346.20521.1 vs. uniprot
Match: A0A5A8E4R4_CAFRO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4R4_CAFRO)

HSP 1 Score: 58.5 bits (140), Expect = 4.470e-8
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0 
Query:    2 VDQRQSLGALREVIASVMGVPKDSFKILRTERGPEMKDGEKSLTYYGFMGGGRVWLRPGRPLSLGEVALKISLF 75
            VDQRQ+LG LR  +         + +++R   G EMKD  K L ++G +GGG+V L  GRPL+  E  LK+ +F
Sbjct:  494 VDQRQTLGELRRAVEGATRATPGTVRVMRPG-GFEMKDATKPLAFHGLLGGGKVRLERGRPLTPAEFTLKVVVF 566
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BLAST of mRNA_M-pyrifera_M_contig88346.20521.1 vs. uniprot
Match: A0A5A8CLR4_CAFRO (USP domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLR4_CAFRO)

HSP 1 Score: 58.5 bits (140), Expect = 4.520e-8
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0 
Query:    2 VDQRQSLGALREVIASVMGVPKDSFKILRTERGPEMKDGEKSLTYYGFMGGGRVWLRPGRPLSLGEVALKISLF 75
            VDQRQ+LG LR  +         + +++R   G EMKD  K L ++G +GGG+V L  GRPL+  E  LK+ +F
Sbjct:  825 VDQRQTLGELRRAVEGATRATPGTVRVMRPG-GFEMKDATKPLAFHGLLGGGKVRLERGRPLTPAEFTLKVVVF 897
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88346.20521.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E4R4_CAFRO4.470e-841.89Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cafe... [more]
A0A5A8CLR4_CAFRO4.520e-841.89USP domain-containing protein n=4 Tax=Cafeteria ro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 3..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88346contigM-pyrifera_M_contig88346:520..774 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88346.20521.1mRNA_M-pyrifera_M_contig88346.20521.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88346 517..774 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88346.20521.1 ID=prot_M-pyrifera_M_contig88346.20521.1|Name=mRNA_M-pyrifera_M_contig88346.20521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MVDQRQSLGALREVIASVMGVPKDSFKILRTERGPEMKDGEKSLTYYGFM
GGGRVWLRPGRPLSLGEVALKISLFDAEAAAKEDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-like_domsf