mRNA_M-pyrifera_M_contig88346.20521.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88346.20521.1
Unique NamemRNA_M-pyrifera_M_contig88346.20521.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88346.20521.1 vs. uniprot
Match: A0A5A8E4R4_CAFRO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E4R4_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 1.820e-8
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    1 VMVDQRQSLGALREVIASVMGVPKDSFKILRTERGPEMKDGEKSLTYYGFMGGGRVWLRPGRPLSLGEVALKISLF 228
            V VDQRQ+LG LR  +         + +++R   G EMKD  K L ++G +GGG+V L  GRPL+  E  LK+ +F
Sbjct:  492 VQVDQRQTLGELRRAVEGATRATPGTVRVMRPG-GFEMKDATKPLAFHGLLGGGKVRLERGRPLTPAEFTLKVVVF 566
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BLAST of mRNA_M-pyrifera_M_contig88346.20521.1 vs. uniprot
Match: A0A5A8CLR4_CAFRO (USP domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLR4_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 1.840e-8
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    1 VMVDQRQSLGALREVIASVMGVPKDSFKILRTERGPEMKDGEKSLTYYGFMGGGRVWLRPGRPLSLGEVALKISLF 228
            V VDQRQ+LG LR  +         + +++R   G EMKD  K L ++G +GGG+V L  GRPL+  E  LK+ +F
Sbjct:  823 VQVDQRQTLGELRRAVEGATRATPGTVRVMRPG-GFEMKDATKPLAFHGLLGGGKVRLERGRPLTPAEFTLKVVVF 897
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88346.20521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E4R4_CAFRO1.820e-842.11Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cafe... [more]
A0A5A8CLR4_CAFRO1.840e-842.11USP domain-containing protein n=4 Tax=Cafeteria ro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88346contigM-pyrifera_M_contig88346:517..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog227086.JGI_V11_85524
KEGG koko:K11851,ko:K11857
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Exons1
Model size258
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.2927206-UTR-M-pyrifera_M_contig88346:516..5191622816793.2927206-UTR-M-pyrifera_M_contig88346:516..519Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88346 517..519 +
1692278181.6976526-UTR-M-pyrifera_M_contig88346:516..5191692278181.6976526-UTR-M-pyrifera_M_contig88346:516..519Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88346 517..519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.3077936-CDS-M-pyrifera_M_contig88346:519..7741622816793.3077936-CDS-M-pyrifera_M_contig88346:519..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88346 520..774 +
1692278181.7155414-CDS-M-pyrifera_M_contig88346:519..7741692278181.7155414-CDS-M-pyrifera_M_contig88346:519..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88346 520..774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88346.20521.1prot_M-pyrifera_M_contig88346.20521.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88346 520..774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88346.20521.1

>prot_M-pyrifera_M_contig88346.20521.1 ID=prot_M-pyrifera_M_contig88346.20521.1|Name=mRNA_M-pyrifera_M_contig88346.20521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MVDQRQSLGALREVIASVMGVPKDSFKILRTERGPEMKDGEKSLTYYGFM
GGGRVWLRPGRPLSLGEVALKISLFDAEAAAKEDD
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mRNA from alignment at M-pyrifera_M_contig88346:517..774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88346.20521.1 ID=mRNA_M-pyrifera_M_contig88346.20521.1|Name=mRNA_M-pyrifera_M_contig88346.20521.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig88346:517..774+ (Macrocystis pyrifera P11B4 male)
GTTATGGTGGATCAGCGTCAATCGCTCGGTGCGTTGCGTGAGGTGATTGC
AAGTGTCATGGGTGTTCCAAAGGATAGCTTCAAGATTTTGCGTACAGAAA
GAGGTCCTGAGATGAAGGATGGGGAAAAGAGTTTGACGTATTATGGGTTT
ATGGGTGGTGGGAGAGTGTGGTTGCGTCCAGGTCGTCCCTTGTCTCTTGG
AGAGGTTGCATTGAAGATTTCTCTGTTTGATGCGGAAGCAGCTGCAAAAG
AAGACGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88346:517..774+

>mRNA_M-pyrifera_M_contig88346.20521.1 ID=mRNA_M-pyrifera_M_contig88346.20521.1|Name=mRNA_M-pyrifera_M_contig88346.20521.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig88346:517..774+ (Macrocystis pyrifera P11B4 male)
ATGGTGGATCAGCGTCAATCGCTCGGTGCGTTGCGTGAGGTGATTGCAAG
TGTCATGGGTGTTCCAAAGGATAGCTTCAAGATTTTGCGTACAGAAAGAG
GTCCTGAGATGAAGGATGGGGAAAAGAGTTTGACGTATTATGGGTTTATG
GGTGGTGGGAGAGTGTGGTTGCGTCCAGGTCGTCCCTTGTCTCTTGGAGA
GGTTGCATTGAAGATTTCTCTGTTTGATGCGGAAGCAGCTGCAAAAGAAG
ACGATATGGTGGATCAGCGTCAATCGCTCGGTGCGTTGCGTGAGGTGATT
GCAAGTGTCATGGGTGTTCCAAAGGATAGCTTCAAGATTTTGCGTACAGA
AAGAGGTCCTGAGATGAAGGATGGGGAAAAGAGTTTGACGTATTATGGGT
TTATGGGTGGTGGGAGAGTGTGGTTGCGTCCAGGTCGTCCCTTGTCTCTT
GGAGAGGTTGCATTGAAGATTTCTCTGTTTGATGCGGAAGCAGCTGCAAA
AGAAGACGAT
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