prot_M-pyrifera_M_contig88252.20492.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig88252.20492.1
Unique Nameprot_M-pyrifera_M_contig88252.20492.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length62
Homology
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BLAST of mRNA_M-pyrifera_M_contig88252.20492.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.450e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0 
Query:   18 LGQLYVHQSGKSRLVIGGVSFVVHPGLPVSFVEKGVSIDA 57
            +G+LYVHQSGK+RLVIGGVS VVHPGLPVSFVE+GVSIDA
Sbjct:  349 IGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDA 388
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BLAST of mRNA_M-pyrifera_M_contig88252.20492.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.540e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0 
Query:   18 LGQLYVHQSGKSRLVIGGVSFVVHPGLPVSFVEKGVSIDA 57
            +G+LYVHQSGK+RLVIGGVS VVHPGLPVSFVE+GVSIDA
Sbjct:  414 IGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDA 453
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88252.20492.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXQ5_9PHAE2.450e-1487.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB7_ECTSI2.540e-1487.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 15..58
e-value: 1.6E-9
score: 38.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88252contigM-pyrifera_M_contig88252:482..667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88252.20492.1mRNA_M-pyrifera_M_contig88252.20492.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig88252 482..667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig88252.20492.1 ID=prot_M-pyrifera_M_contig88252.20492.1|Name=mRNA_M-pyrifera_M_contig88252.20492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MLALNIPPPPPPPSSPCLGQLYVHQSGKSRLVIGGVSFVVHPGLPVSFVE
KGVSIDAGSNRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4