mRNA_M-pyrifera_M_contig88252.20492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88252.20492.1
Unique NamemRNA_M-pyrifera_M_contig88252.20492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88252.20492.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.450e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   52 LGQLYVHQSGKSRLVIGGVSFVVHPGLPVSFVEKGVSIDA 171
            +G+LYVHQSGK+RLVIGGVS VVHPGLPVSFVE+GVSIDA
Sbjct:  349 IGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDA 388
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BLAST of mRNA_M-pyrifera_M_contig88252.20492.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.540e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   52 LGQLYVHQSGKSRLVIGGVSFVVHPGLPVSFVEKGVSIDA 171
            +G+LYVHQSGK+RLVIGGVS VVHPGLPVSFVE+GVSIDA
Sbjct:  414 IGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDA 453
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88252.20492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXQ5_9PHAE2.450e-1487.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB7_ECTSI2.540e-1487.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88252contigM-pyrifera_M_contig88252:482..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase III subunit RPC4
Ec32 orthologEc-24_001300.1
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.8758893-CDS-M-pyrifera_M_contig88252:481..6671622816791.8758893-CDS-M-pyrifera_M_contig88252:481..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88252 482..667 -
1692278180.8837647-CDS-M-pyrifera_M_contig88252:481..6671692278180.8837647-CDS-M-pyrifera_M_contig88252:481..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88252 482..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88252.20492.1prot_M-pyrifera_M_contig88252.20492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88252 482..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88252.20492.1

>prot_M-pyrifera_M_contig88252.20492.1 ID=prot_M-pyrifera_M_contig88252.20492.1|Name=mRNA_M-pyrifera_M_contig88252.20492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MLALNIPPPPPPPSSPCLGQLYVHQSGKSRLVIGGVSFVVHPGLPVSFVE
KGVSIDAGSNRS
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mRNA from alignment at M-pyrifera_M_contig88252:482..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88252.20492.1 ID=mRNA_M-pyrifera_M_contig88252.20492.1|Name=mRNA_M-pyrifera_M_contig88252.20492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig88252:482..667- (Macrocystis pyrifera P11B4 male)
ATGCTTGCGCTTAACATACCCCCCCCTCCCCCTCCCCCGTCGTCTCCGTG
CCTTGGACAGCTGTACGTGCACCAGTCCGGCAAATCGCGGCTCGTTATCG
GTGGCGTTAGCTTTGTCGTCCACCCTGGCCTGCCGGTGTCCTTCGTGGAG
AAGGGGGTCAGCATCGACGCGGGCAGCAACAGGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88252:482..667-

>mRNA_M-pyrifera_M_contig88252.20492.1 ID=mRNA_M-pyrifera_M_contig88252.20492.1|Name=mRNA_M-pyrifera_M_contig88252.20492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig88252:482..667- (Macrocystis pyrifera P11B4 male)
ATGCTTGCGCTTAACATACCCCCCCCTCCCCCTCCCCCGTCGTCTCCGTG
CCTTGGACAGCTGTACGTGCACCAGTCCGGCAAATCGCGGCTCGTTATCG
GTGGCGTTAGCTTTGTCGTCCACCCTGGCCTGCCGGTGTCCTTCGTGGAG
AAGGGGGTCAGCATCGACGCGGGCAGCAACAGGAGCATGCTTGCGCTTAA
CATACCCCCCCCTCCCCCTCCCCCGTCGTCTCCGTGCCTTGGACAGCTGT
ACGTGCACCAGTCCGGCAAATCGCGGCTCGTTATCGGTGGCGTTAGCTTT
GTCGTCCACCCTGGCCTGCCGGTGTCCTTCGTGGAGAAGGGGGTCAGCAT
CGACGCGGGCAGCAACAGGAGC
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