prot_M-pyrifera_M_contig74708.17671.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig74708.17671.1
Unique Nameprot_M-pyrifera_M_contig74708.17671.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length98
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig74708.17671.1 vs. uniprot
Match: A0A7W1JM88_9BACT (Tetratricopeptide repeat protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7W1JM88_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.340e-5
Identity = 25/79 (31.65%), Postives = 42/79 (53.16%), Query Frame = 0 
Query:   20 MDEDDFEHLMQEAIDAGSKGDLQRALPLFRRLAELDSENSAAWTNLGVTEMRAGHTEAAQEAYDRAMDLAPWDVTPRFN 98
            M  D  + L+ +A D   + + ++A  + R+  E+D+ NS A+  LGV   R G  E A +A+ RA+  AP+     +N
Sbjct:    1 MSTDQVKQLITDASDHVREQNFEKAAEIARQALEVDTRNSDAYGVLGVAFARLGRIEEATDAFQRAVQTAPYSARSYYN 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74708.17671.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W1JM88_9BACT4.340e-531.65Tetratricopeptide repeat protein n=1 Tax=Armatimon... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 16..98
e-value: 7.6E-16
score: 60.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 20..97
NoneNo IPR availablePFAMPF14559TPR_19coord: 39..90
e-value: 5.8E-7
score: 29.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..98
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.864
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 25..58
score: 5.782
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 59..92
score: 10.679
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 25..92
score: 14.212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74708contigM-pyrifera_M_contig74708:768..1061 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74708.17671.1mRNA_M-pyrifera_M_contig74708.17671.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig74708 768..1061 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig74708.17671.1 ID=prot_M-pyrifera_M_contig74708.17671.1|Name=mRNA_M-pyrifera_M_contig74708.17671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MCHTIFLSVLLCVFVVVGAMDEDDFEHLMQEAIDAGSKGDLQRALPLFRR
LAELDSENSAAWTNLGVTEMRAGHTEAAQEAYDRAMDLAPWDVTPRFN
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
IPR013026TPR-contain_dom