prot_M-pyrifera_M_contig73982.17522.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig73982.17522.1
Unique Nameprot_M-pyrifera_M_contig73982.17522.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length246
Homology
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BLAST of mRNA_M-pyrifera_M_contig73982.17522.1 vs. uniprot
Match: A0A8C3RTT4_CHESE (RING-type domain-containing protein n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RTT4_CHESE)

HSP 1 Score: 53.9 bits (128), Expect = 1.690e-5
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 0 
Query:    5 EDLRVKIHGTVSDDCPICLERMANISIIQPCLHFTCKSCMSKLS---GKCPMCRSLF 58
            ED+ V   G+    CPICLER+ N+S + PC H  C  C+ + S    +CP+C+  F
Sbjct:   23 EDVPVAAEGSSDSRCPICLERIRNVSYLNPCFHGFCFVCIQEWSERKAECPLCKQYF 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73982.17522.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8C3RTT4_CHESE1.690e-540.35RING-type domain-containing protein n=1 Tax=Chelyd... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 19..54
e-value: 4.1E-5
score: 33.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 19..55
score: 12.061
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..65
e-value: 1.5E-10
score: 42.3
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 17..56
e-value: 6.4E-10
score: 38.7
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 14..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73982contigM-pyrifera_M_contig73982:139..876 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73982.17522.1mRNA_M-pyrifera_M_contig73982.17522.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig73982 139..876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig73982.17522.1 ID=prot_M-pyrifera_M_contig73982.17522.1|Name=mRNA_M-pyrifera_M_contig73982.17522.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
VRKLEDLRVKIHGTVSDDCPICLERMANISIIQPCLHFTCKSCMSKLSGK
CPMCRSLFSGTVGISTQDRPPVKKARVASTGQVADVGSSADQPAAARIGD
LFFDEMAAVCGPNKPSGVSRAIQTTLGAIQNARNKSSRSKKTLRTMIICP
GADMREDLFEDAGFDVFHYKTSGTKSSPVTMKKMRTLMRDFQSDDGKCKL
LCVRDAGYQANEDNMTGLDVRLDCVVAIGNGNLAQRLGRLCRLSRI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD