mRNA_M-pyrifera_M_contig73982.17522.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73982.17522.1
Unique NamemRNA_M-pyrifera_M_contig73982.17522.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73982.17522.1 vs. uniprot
Match: A0A8C3RTT4_CHESE (RING-type domain-containing protein n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RTT4_CHESE)

HSP 1 Score: 53.9 bits (128), Expect = 1.690e-5
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   13 EDLRVKIHGTVSDDCPICLERMANISIIQPCLHFTCKSCMSKLS---GKCPMCRSLF 174
            ED+ V   G+    CPICLER+ N+S + PC H  C  C+ + S    +CP+C+  F
Sbjct:   23 EDVPVAAEGSSDSRCPICLERIRNVSYLNPCFHGFCFVCIQEWSERKAECPLCKQYF 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73982.17522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8C3RTT4_CHESE1.690e-540.35RING-type domain-containing protein n=1 Tax=Chelyd... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73982contigM-pyrifera_M_contig73982:139..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.5603178-CDS-M-pyrifera_M_contig73982:138..8761622816637.5603178-CDS-M-pyrifera_M_contig73982:138..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73982 139..876 +
1692278091.5503786-CDS-M-pyrifera_M_contig73982:138..8761692278091.5503786-CDS-M-pyrifera_M_contig73982:138..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73982 139..876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73982.17522.1prot_M-pyrifera_M_contig73982.17522.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73982 139..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73982.17522.1

>prot_M-pyrifera_M_contig73982.17522.1 ID=prot_M-pyrifera_M_contig73982.17522.1|Name=mRNA_M-pyrifera_M_contig73982.17522.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
VRKLEDLRVKIHGTVSDDCPICLERMANISIIQPCLHFTCKSCMSKLSGK
CPMCRSLFSGTVGISTQDRPPVKKARVASTGQVADVGSSADQPAAARIGD
LFFDEMAAVCGPNKPSGVSRAIQTTLGAIQNARNKSSRSKKTLRTMIICP
GADMREDLFEDAGFDVFHYKTSGTKSSPVTMKKMRTLMRDFQSDDGKCKL
LCVRDAGYQANEDNMTGLDVRLDCVVAIGNGNLAQRLGRLCRLSRI
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mRNA from alignment at M-pyrifera_M_contig73982:139..876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73982.17522.1 ID=mRNA_M-pyrifera_M_contig73982.17522.1|Name=mRNA_M-pyrifera_M_contig73982.17522.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig73982:139..876+ (Macrocystis pyrifera P11B4 male)
GTGCGAAAGTTGGAGGATCTGAGGGTCAAGATCCACGGGACTGTTTCCGA
CGACTGTCCGATCTGCCTGGAGCGCATGGCCAACATCTCAATCATCCAAC
CCTGTCTTCACTTTACATGTAAGAGTTGCATGTCCAAACTTTCTGGGAAG
TGCCCGATGTGCAGGAGTCTCTTCTCGGGGACTGTTGGCATTAGCACACA
GGACAGGCCTCCCGTCAAGAAGGCGCGCGTTGCTAGTACTGGCCAAGTTG
CTGATGTTGGTAGTAGCGCCGACCAGCCAGCAGCAGCGCGCATCGGCGAC
CTGTTCTTCGACGAGATGGCCGCCGTCTGTGGCCCGAACAAACCGTCCGG
GGTCTCGCGGGCGATTCAGACGACGCTGGGGGCCATACAGAACGCCCGGA
ACAAGTCCAGCAGGTCCAAAAAGACGCTACGGACGATGATCATCTGCCCC
GGTGCCGACATGAGAGAGGATCTCTTCGAAGACGCAGGGTTTGACGTGTT
TCACTACAAGACCTCCGGGACCAAGAGTAGCCCGGTTACAATGAAGAAGA
TGCGCACGCTCATGCGGGATTTCCAGAGCGACGACGGGAAGTGTAAGCTG
CTGTGCGTCCGCGACGCGGGGTATCAAGCAAACGAGGACAACATGACGGG
GCTTGACGTGAGGCTGGACTGTGTGGTCGCCATAGGGAATGGAAACCTAG
CGCAGAGACTCGGGAGGCTCTGCAGGCTCTCGAGGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73982:139..876+

>mRNA_M-pyrifera_M_contig73982.17522.1 ID=mRNA_M-pyrifera_M_contig73982.17522.1|Name=mRNA_M-pyrifera_M_contig73982.17522.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig73982:139..876+ (Macrocystis pyrifera P11B4 male)
GTGCGAAAGTTGGAGGATCTGAGGGTCAAGATCCACGGGACTGTTTCCGA
CGACTGTCCGATCTGCCTGGAGCGCATGGCCAACATCTCAATCATCCAAC
CCTGTCTTCACTTTACATGTAAGAGTTGCATGTCCAAACTTTCTGGGAAG
TGCCCGATGTGCAGGAGTCTCTTCTCGGGGACTGTTGGCATTAGCACACA
GGACAGGCCTCCCGTCAAGAAGGCGCGCGTTGCTAGTACTGGCCAAGTTG
CTGATGTTGGTAGTAGCGCCGACCAGCCAGCAGCAGCGCGCATCGGCGAC
CTGTTCTTCGACGAGATGGCCGCCGTCTGTGGCCCGAACAAACCGTCCGG
GGTCTCGCGGGCGATTCAGACGACGCTGGGGGCCATACAGAACGCCCGGA
ACAAGTCCAGCAGGTCCAAAAAGACGCTACGGACGATGATCATCTGCCCC
GGTGCCGACATGAGAGAGGATCTCTTCGAAGACGCAGGGTTTGACGTGTT
TCACTACAAGACCTCCGGGACCAAGAGTAGCCCGGTTACAATGAAGAAGA
TGCGCACGCTCATGCGGGATTTCCAGAGCGACGACGGGAAGTGTAAGCTG
CTGTGCGTCCGCGACGCGGGGTATCAAGCAAACGAGGACAACATGACGGG
GCTTGACGTGAGGCTGGACTGTGTGGTCGCCATAGGGAATGGAAACCTAG
CGCAGAGACTCGGGAGGCTCTGCAGGCTCTCGAGGATTGTGCGAAAGTTG
GAGGATCTGAGGGTCAAGATCCACGGGACTGTTTCCGACGACTGTCCGAT
CTGCCTGGAGCGCATGGCCAACATCTCAATCATCCAACCCTGTCTTCACT
TTACATGTAAGAGTTGCATGTCCAAACTTTCTGGGAAGTGCCCGATGTGC
AGGAGTCTCTTCTCGGGGACTGTTGGCATTAGCACACAGGACAGGCCTCC
CGTCAAGAAGGCGCGCGTTGCTAGTACTGGCCAAGTTGCTGATGTTGGTA
GTAGCGCCGACCAGCCAGCAGCAGCGCGCATCGGCGACCTGTTCTTCGAC
GAGATGGCCGCCGTCTGTGGCCCGAACAAACCGTCCGGGGTCTCGCGGGC
GATTCAGACGACGCTGGGGGCCATACAGAACGCCCGGAACAAGTCCAGCA
GGTCCAAAAAGACGCTACGGACGATGATCATCTGCCCCGGTGCCGACATG
AGAGAGGATCTCTTCGAAGACGCAGGGTTTGACGTGTTTCACTACAAGAC
CTCCGGGACCAAGAGTAGCCCGGTTACAATGAAGAAGATGCGCACGCTCA
TGCGGGATTTCCAGAGCGACGACGGGAAGTGTAAGCTGCTGTGCGTCCGC
GACGCGGGGTATCAAGCAAACGAGGACAACATGACGGGGCTTGACGTGAG
GCTGGACTGTGTGGTCGCCATAGGGAATGGAAACCTAGCGCAGAGACTCG
GGAGGCTCTGCAGGCTCTCGAGGATT
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