prot_M-pyrifera_M_contig7364.17450.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7364.17450.1
Unique Nameprot_M-pyrifera_M_contig7364.17450.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length121
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7364.17450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 89..114
e-value: 0.14
score: 21.2
coord: 63..88
e-value: 0.001
score: 28.4
coord: 11..36
e-value: 0.0075
score: 25.5
coord: 37..62
e-value: 1.4E-5
score: 34.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 11..34
e-value: 0.19
score: 11.9
coord: 36..60
e-value: 0.0098
score: 15.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..119
e-value: 2.9E-30
score: 107.0
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 1..112
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 1..112
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 4..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7364contigM-pyrifera_M_contig7364:4728..6527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7364.17450.1mRNA_M-pyrifera_M_contig7364.17450.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7364 4728..6527 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7364.17450.1 ID=prot_M-pyrifera_M_contig7364.17450.1|Name=mRNA_M-pyrifera_M_contig7364.17450.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
DVGVRALAVGCSGLKALGLRDCGQVTDSALEALSLHCSSLEWLDLSWCGG
VSDRGLVRLAKSCPDLEEVQAVWCENITDASLAALSAFCKHLEALHVGGC
RGVTPSAVAALREKGVEVLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf