mRNA_M-pyrifera_M_contig7364.17450.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7364.17450.1
Unique NamemRNA_M-pyrifera_M_contig7364.17450.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7364.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7364contigM-pyrifera_M_contig7364:4728..6527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size365
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7364.17450.1prot_M-pyrifera_M_contig7364.17450.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7364 4728..6527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.5832164-CDS-M-pyrifera_M_contig7364:4727..47991622816633.5832164-CDS-M-pyrifera_M_contig7364:4727..4799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7364 4728..4799 +
1692278089.2330172-CDS-M-pyrifera_M_contig7364:4727..47991692278089.2330172-CDS-M-pyrifera_M_contig7364:4727..4799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7364 4728..4799 +
1622816633.5947635-CDS-M-pyrifera_M_contig7364:5039..51711622816633.5947635-CDS-M-pyrifera_M_contig7364:5039..5171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7364 5040..5171 +
1692278089.2428718-CDS-M-pyrifera_M_contig7364:5039..51711692278089.2428718-CDS-M-pyrifera_M_contig7364:5039..5171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7364 5040..5171 +
1622816633.6051548-CDS-M-pyrifera_M_contig7364:6368..65271622816633.6051548-CDS-M-pyrifera_M_contig7364:6368..6527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7364 6369..6527 +
1692278089.2630267-CDS-M-pyrifera_M_contig7364:6368..65271692278089.2630267-CDS-M-pyrifera_M_contig7364:6368..6527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7364 6369..6527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7364.17450.1

>prot_M-pyrifera_M_contig7364.17450.1 ID=prot_M-pyrifera_M_contig7364.17450.1|Name=mRNA_M-pyrifera_M_contig7364.17450.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
DVGVRALAVGCSGLKALGLRDCGQVTDSALEALSLHCSSLEWLDLSWCGG
VSDRGLVRLAKSCPDLEEVQAVWCENITDASLAALSAFCKHLEALHVGGC
RGVTPSAVAALREKGVEVLQ*
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mRNA from alignment at M-pyrifera_M_contig7364:4728..6527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7364.17450.1 ID=mRNA_M-pyrifera_M_contig7364.17450.1|Name=mRNA_M-pyrifera_M_contig7364.17450.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at M-pyrifera_M_contig7364:4728..6527+ (Macrocystis pyrifera P11B4 male)
GACGTCGGGGTTAGGGCTCTTGCGGTGGGGTGCTCGGGGTTGAAGGCCCT
CGGCCTGAGGGACTGCGGACAGGTGTGTGTTGTGGTGGAAGTGGTTGTGG
GGTTGGTTGAGGGGGGGGAGGTTGGGCAGGCGGCGGGCGGGCGGGATAGG
TGCTACCTCGTGGACTATAGCGGGGTCCGAAAAACCGAATGCAAAGCACG
CGAGAACTCCAGTCCTTATTTCTATCTTCTCTGCCCCACACCTCTATCTA
CCTCCCTGCGCCCTCCAACCTCAACCTGCTGCCCATTTGTTTTTTTATAA
ATTTCGTCGCAGGTCACTGACAGCGCTCTGGAGGCGCTGTCCTTGCATTG
TTCGTCCCTGGAATGGCTGGACTTATCTTGGTGCGGAGGCGTGTCGGACA
GGGGGTTGGTGCGGCTAGCGAAAAGCTGTCCGGACCTGGAAGAGGCAAGC
TCCAAACCACAAAACACCCTTCCCCCCGCCCCCCTCTTCCCTTACCCCCA
CCCCTTTCCCCCCTTACCTCCACCCCGTCTCTTCGCTCCTTACTTCTGCC
CCCCTCCCCTGTTACTCCCCCCGCCCGCCTCTCTCCGTTTGTCATGCCCC
AGCGCATTTACCATTCGTCCGCCAAAATTACTTCCCGGTATCGTCTCCGT
CTTCCGTGCCGTTAGAATTGCCGTTACCGTCGCCATAACCGTTGCCTTTA
TGTTTCTCTTCACGGTTACCGTTACCGTTACCCCTACCGTTTTCATTTTC
CGTCAGAGTTTTCATTTCCCGTTTTCGGTACGGTTGGCATCACCGTCCCC
GTTACCGTTGCCATTATTACTGCCGTTGCCGTTACCGCTGTCGCCTCCAT
TACGAAACACTGGAGTTTATAACTTGAGAAAACGACACAAGTAGTTGATA
AAAGTACGCTGAAGTCGCTAACTTCTTCATTTGGTAGAATAATTCGAGTC
TGATGGGCTCAGAAACTATGTACTCTTTAACGGCAACCGAACGCACCTAC
TACTGATAAAATCGAACGAGTACAGCCGGAGTTACAGTAAAAGCAACATG
TTTACCGCGGATTCTTACATTTTCCGCTTCAAACGATTGTTTTTGCTGTA
CCTCCGGCTGTGCTCGTTCGATTTTATCAAGAGTAGTAGGCTCGTTCGGC
TGCTGTTGAAGAGTACATAGTTTTTGAGCCCGTAAGACTCGAAATATTTT
ACGAAGTGAAGAACTTGGCCGCTTTAAGGCGTTTTTTTCTCAACTACTTG
TCATTTTTTCAACTTTCAAAATCCAGTGTTTACGGGTTCCGTTGTCGCTG
CTATTACCAAAACGACTTCCACTACCATTACCGTTACCTTTTCCACTGCA
GGTCCCATTACCGCTACCATTACCGTTTTCCAAAACCACTACCATTACCA
TTACCATTTCCATTAAGGTTGCCTTTTCCACTGCAGGTTCCATTACCGTT
TTCCGAAACCACTACCACGACCAATACTGTTTTACTGTTCCGTTTCCACT
ATCGTTACCGTTCCCATCACCGTTACCACGGCCCATATTTTTTTTTCCCG
TTACTATTATCATCACCATTTACCGTCAACACTACCGATAACGTTACCAT
TTCGCCGTACACCGTTGCCCTTACCGTCTGTGTTGATTCAGGTCCAAGCG
GTTTGGTGCGAGAACATAACGGACGCCTCGCTAGCGGCTCTCTCGGCATT
TTGCAAGCACTTAGAAGCGTTGCACGTTGGGGGTTGCAGGGGCGTAACAC
CATCCGCGGTGGCAGCGCTACGCGAGAAAGGCGTCGAGGTTCTCCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7364:4728..6527+

>mRNA_M-pyrifera_M_contig7364.17450.1 ID=mRNA_M-pyrifera_M_contig7364.17450.1|Name=mRNA_M-pyrifera_M_contig7364.17450.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig7364:4728..6527+ (Macrocystis pyrifera P11B4 male)
GACGTCGGGGTTAGGGCTCTTGCGGTGGGGTGCTCGGGGTTGAAGGCCCT
CGGCCTGAGGGACTGCGGACAGGACGTCGGGGTTAGGGCTCTTGCGGTGG
GGTGCTCGGGGTTGAAGGCCCTCGGCCTGAGGGACTGCGGACAGGTCACT
GACAGCGCTCTGGAGGCGCTGTCCTTGCATTGTTCGTCCCTGGAATGGCT
GGACTTATCTTGGTGCGGAGGCGTGTCGGACAGGGGGTTGGTGCGGCTAG
CGAAAAGCTGTCCGGACCTGGAAGAGGTCACTGACAGCGCTCTGGAGGCG
CTGTCCTTGCATTGTTCGTCCCTGGAATGGCTGGACTTATCTTGGTGCGG
AGGCGTGTCGGACAGGGGGTTGGTGCGGCTAGCGAAAAGCTGTCCGGACC
TGGAAGAGGTCCAAGCGGTTTGGTGCGAGAACATAACGGACGCCTCGCTA
GCGGCTCTCTCGGCATTTTGCAAGCACTTAGAAGCGTTGCACGTTGGGGG
TTGCAGGGGCGTAACACCATCCGCGGTGGCAGCGCTACGCGAGAAAGGCG
TCGAGGTTCTCCAATGAGTCCAAGCGGTTTGGTGCGAGAACATAACGGAC
GCCTCGCTAGCGGCTCTCTCGGCATTTTGCAAGCACTTAGAAGCGTTGCA
CGTTGGGGGTTGCAGGGGCGTAACACCATCCGCGGTGGCAGCGCTACGCG
AGAAAGGCGTCGAGGTTCTCCAATGA
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