mRNA_M-pyrifera_M_contig91543.21214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig91543.21214.1
Unique NamemRNA_M-pyrifera_M_contig91543.21214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig91543.21214.1 vs. uniprot
Match: A0A0P1GAU3_9RHOB (Beta-glucanase n=2 Tax=Thalassobius autumnalis TaxID=2072972 RepID=A0A0P1GAU3_9RHOB)

HSP 1 Score: 50.8 bits (120), Expect = 8.150e-5
Identity = 26/79 (32.91%), Postives = 41/79 (51.90%), Query Frame = 1 
Query:   55 NEMDICLKGAENEGETGSFHAATWINGTEDFADVPLDFSPAKELAEFKMHWYADRIDWFVNGKMLHQVTKQ-DAIPWEP 288
            +E+DI   G +    T   H + W++G  +   VPL F  A     +   W+ DR+ WFV G+++H+V  +  AIP  P
Sbjct:  190 DEIDIEFLGRD----TRKLHLSWWVDGVLNSHVVPLGFDAADGPRLYAFEWHPDRLRWFVEGRLVHEVRAETSAIPAVP 264
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig91543.21214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0P1GAU3_9RHOB8.150e-532.91Beta-glucanase n=2 Tax=Thalassobius autumnalis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig91543contigM-pyrifera_M_contig91543:334..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816828.5344732-CDS-M-pyrifera_M_contig91543:333..7141622816828.5344732-CDS-M-pyrifera_M_contig91543:333..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91543 334..714 +
1692278202.6053739-CDS-M-pyrifera_M_contig91543:333..7141692278202.6053739-CDS-M-pyrifera_M_contig91543:333..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig91543 334..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig91543.21214.1prot_M-pyrifera_M_contig91543.21214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig91543 334..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig91543.21214.1

>prot_M-pyrifera_M_contig91543.21214.1 ID=prot_M-pyrifera_M_contig91543.21214.1|Name=mRNA_M-pyrifera_M_contig91543.21214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
PPGNAFVCISTYIHDPVWNEMDICLKGAENEGETGSFHAATWINGTEDFA
DVPLDFSPAKELAEFKMHWYADRIDWFVNGKMLHQVTKQDAIPWEPMTVR
IIQRPISLPYEGESHLAIEEISYTPN*
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mRNA from alignment at M-pyrifera_M_contig91543:334..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig91543.21214.1 ID=mRNA_M-pyrifera_M_contig91543.21214.1|Name=mRNA_M-pyrifera_M_contig91543.21214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig91543:334..714+ (Macrocystis pyrifera P11B4 male)
CCTCCAGGGAATGCTTTTGTTTGTATTTCGACATATATTCATGACCCTGT
GTGGAATGAGATGGATATCTGTTTGAAAGGTGCAGAGAATGAGGGGGAGA
CGGGGAGTTTTCATGCTGCAACTTGGATCAATGGGACAGAGGATTTTGCA
GACGTTCCTTTGGATTTCTCCCCTGCCAAGGAGCTTGCAGAATTCAAAAT
GCACTGGTATGCTGATCGAATTGACTGGTTTGTCAATGGCAAGATGCTGC
ATCAAGTTACAAAGCAAGACGCCATTCCATGGGAACCAATGACGGTTCGA
ATCATTCAACGGCCTATTTCCTTACCCTATGAGGGAGAAAGTCACCTAGC
CATTGAAGAAATATCATACACTCCAAATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig91543:334..714+

>mRNA_M-pyrifera_M_contig91543.21214.1 ID=mRNA_M-pyrifera_M_contig91543.21214.1|Name=mRNA_M-pyrifera_M_contig91543.21214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig91543:334..714+ (Macrocystis pyrifera P11B4 male)
CCTCCAGGGAATGCTTTTGTTTGTATTTCGACATATATTCATGACCCTGT
GTGGAATGAGATGGATATCTGTTTGAAAGGTGCAGAGAATGAGGGGGAGA
CGGGGAGTTTTCATGCTGCAACTTGGATCAATGGGACAGAGGATTTTGCA
GACGTTCCTTTGGATTTCTCCCCTGCCAAGGAGCTTGCAGAATTCAAAAT
GCACTGGTATGCTGATCGAATTGACTGGTTTGTCAATGGCAAGATGCTGC
ATCAAGTTACAAAGCAAGACGCCATTCCATGGGAACCAATGACGGTTCGA
ATCATTCAACGGCCTATTTCCTTACCCTATGAGGGAGAAAGTCACCTAGC
CATTGAAGAAATATCATACACTCCAAATTGACCTCCAGGGAATGCTTTTG
TTTGTATTTCGACATATATTCATGACCCTGTGTGGAATGAGATGGATATC
TGTTTGAAAGGTGCAGAGAATGAGGGGGAGACGGGGAGTTTTCATGCTGC
AACTTGGATCAATGGGACAGAGGATTTTGCAGACGTTCCTTTGGATTTCT
CCCCTGCCAAGGAGCTTGCAGAATTCAAAATGCACTGGTATGCTGATCGA
ATTGACTGGTTTGTCAATGGCAAGATGCTGCATCAAGTTACAAAGCAAGA
CGCCATTCCATGGGAACCAATGACGGTTCGAATCATTCAACGGCCTATTT
CCTTACCCTATGAGGGAGAAAGTCACCTAGCCATTGAAGAAATATCATAC
ACTCCAAATTGA
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