mRNA_M-pyrifera_M_contig90525.20988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90525.20988.1
Unique NamemRNA_M-pyrifera_M_contig90525.20988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: W7HVG3_9PEZI (RNA-dependent RNA polymerase n=1 Tax=Drechslerella stenobrocha 248 TaxID=1043628 RepID=W7HVG3_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 8.850e-10
Identity = 62/200 (31.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:    1 TLEVMRFSSPPAPASTHFALLVLLLSWGCPCGVLRARLSERAA-ELRRALRDLETCKRVLLEAGHGA-----TIDQVAATSTRSQVG-----RAAALIAYGMDA-EPAVASATYNVGRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSCP-----PTGVSHDGILRGPVLVARAPCHAASDLQAWTAVNL 549
            TL+V++ SS  +P + +F LL +LL  G P   L   L E  A E+     +      + L A  G      + D+    S R  +      RAA ++  G    EP +    Y   +A  D V ++  +R+ +S     +PDP+G L+ GQ+++ FS P     P  +    +L+G VLV R P H ASD+Q  TAV++
Sbjct:  849 TLDVVQVSSSLSPTTLNFQLLPILLQNGVPYEALADLLREDIAREIGDLFEEGRLSNAIYLRAYLGRISFNFSRDEQDRISARGSMPAKKSERAALMLESGFTLQEPCLRDWFYETLKAHCDDVKEKMHIRVAKSCYPFCIPDPSGRLKKGQIYLRFSQPRNFVDPKTMLSIDVLQGDVLVGRNPAHFASDIQRVTAVDI 1048          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A1X2I9U5_9FUNG (RNA-dependent RNA polymerase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I9U5_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 5.270e-7
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  289 VASATYNVGRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSC----PPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVN 546
            +AS T  V +A L  +  +  + ++QS +L+ +PDPTG+L+P +VF+  S       TG+ H G++ G +LV R PC   SD+Q   AV+
Sbjct:  773 LASKTTTVFKAMLQTLSSKYRVEVQQSCTLMCIPDPTGILKPNEVFLQLSNRKVDEKTGI-HAGLITGDILVTRNPCGLKSDIQKVRAVD 861          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A436ZNP6_9PEZI (RNA-directed RNA polymerase n=1 Tax=Arthrobotrys flagrans TaxID=97331 RepID=A0A436ZNP6_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 8.260e-6
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  328 DAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSC------PPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVNL 549
            +++ D+  +RI QS     VPDP+G L+ GQV++ F        P T ++ D ILRG VLV R P H ASD+Q  TAV++
Sbjct: 1009 ESIKDKMRIRIAQSCQPYCVPDPSGKLKKGQVYLRFGPESKFIDPKTMMAMD-ILRGDVLVGRNPAHFASDVQKVTAVDI 1087          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: UPI0019076D01 (RNA dependent RNA polymerase-domain-containing protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019076D01)

HSP 1 Score: 55.1 bits (131), Expect = 1.490e-5
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  337 VDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSCP---PTGVSHDGILRGPVLVARAPCHAASDLQAWTAVN 546
            +DR  + +  S   L VPDP G+L+PG+VF   S P     G   D +L GPVL  R PC  ASD+Q + AVN
Sbjct:  779 IDRYKVGVPLSAEGLAVPDPLGILEPGEVFCRSSTPWLDSDGHWRDTVL-GPVLATRHPCKVASDVQKFEAVN 850          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A168SEA0_ABSGL (RNA-directed RNA polymerase n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168SEA0_ABSGL)

HSP 1 Score: 55.1 bits (131), Expect = 1.550e-5
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  289 VASATYNVGRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSC----PPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVN 546
            +A+ T +  R  L ++  +  + ++QS +L+ +PDP+GLL+P +VF+  S       TG+ H G++ G +LV+R PC   SD Q   AV+
Sbjct: 1597 IANRTTSAFRGMLVSLSTKYRVEVQQSCTLMCIPDPSGLLKPNEVFLQLSNRRVDEKTGI-HAGLITGDILVSRNPCGLKSDFQKVQAVD 1685          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A163ABK2_PHYB8 (RNA-dependent RNA polymerase n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163ABK2_PHYB8)

HSP 1 Score: 53.5 bits (127), Expect = 4.940e-5
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  283 PAVASATYNVGRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFS---CPPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVN 546
            P +A+   N+ R  +  V+ +  + ++QS +L  VPDPTG+L+ G++F   S             I+ G VLV R PC   SD+Q  TAV+
Sbjct:  616 PFLANKITNIFRDTMRMVMSKYRIEVQQSCTLTCVPDPTGMLEEGEIFFQLSRRRVDEKSAIKSSIVLGDVLVTRNPCGLKSDVQKVTAVD 706          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A8H7VMU2_9FUNG (RNA-dependent RNA polymerase n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VMU2_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 4.990e-5
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  256 LIAYGMD-AEPAVASATYNVGRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSC----PPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVN 546
            L+  G D + P VA    +V R  + AV  +  + +EQS ++  +PDP G+L+PG+VF+  S       TG+   G++ G ++V R PC   SD+Q   AV+
Sbjct:  679 LLDSGFDLSNPHVAMKVTHVFRDVMKAVCTKYKIEVEQSCTVTCIPDPKGILEPGEVFLQLSGRRVDEKTGIPA-GLVTGDLIVTRNPCGLKSDIQKVKAVD 779          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A7C8U3U9_ORBOL (RNA-dependent RNA polymerase n=1 Tax=Orbilia oligospora TaxID=2813651 RepID=A0A7C8U3U9_ORBOL)

HSP 1 Score: 53.1 bits (126), Expect = 6.710e-5
Identity = 63/206 (30.58%), Postives = 100/206 (48.54%), Query Frame = 1
Query:    1 TLEVMRFSSPPAPASTHFALLVLLLSWGCPCGVLRARLSERAAELRRALRDLETCKRVLLEAGHGATIDQVAATSTRSQVGRAAAL---IAYGMDAEPAV--ASATYNVGRAEL------------DAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSC------PPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVNL 549
            TL++   S P +P++ +   +V+LL  G     L   L E   ++R  + +L    R+   A     +++V  + +R   GRA A+   I  G+ AE AV   +A + +    L            D + ++  +RI  S     VPDP+G L+ GQV++ F        P T ++ D +LRG VLV R P H ASD+Q  TAV++
Sbjct:  523 TLDICNTSKPLSPSALNLQFIVILLHNGVTEATLEQLLRE---DIRNEVTELFKDGRLDDGASLRKYLERVKLSGSRRD-GRATAMKGRIPLGL-AERAVDLINAGFTLKNQTLKDWFEKVLTDHCDTLKNKMRIRIPWSCQPYCVPDPSGELKKGQVYLRFGPESKFIDPKTMMAID-VLRGDVLVGRNPAHFASDIQKVTAVDV 722          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A8H7BPM7_9FUNG (RNA-dependent RNA polymerase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BPM7_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 9.090e-5
Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  256 LIAYGMD-AEPAVASATYNVGRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSCPPT----GVSHDGILRGPVLVARAPCHAASDLQAWTAVN 546
            L+  G D + P ++S    + R+ + +V  +  + +EQS ++  +PDPTG L+ GQ+F+  S   T    G+   G++ G  +V R+PC   SD+Q  TAV+
Sbjct:  646 LLDSGFDLSNPYLSSKITQIFRSVMRSVTSKYKIEVEQSCTVTCIPDPTGTLEEGQIFLQLSKRRTDEITGIPA-GLVLGKCIVTRSPCGLKSDIQKVTAVD 746          
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Match: A0A7C8N669_ORBOL (RNA-directed RNA polymerase n=1 Tax=Orbilia oligospora TaxID=2813651 RepID=A0A7C8N669_ORBOL)

HSP 1 Score: 52.8 bits (125), Expect = 9.320e-5
Identity = 56/201 (27.86%), Postives = 91/201 (45.27%), Query Frame = 1
Query:    1 TLEVMRFSSPPAPASTHFALLVLLLSWGCPCGVLRARLSE----RAAELRR--ALRDLETCKRVLLEAGHGATIDQVAATSTRSQVG-----RAAALIAYGMDAEPAVASATYNVGRAE-LDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSC------PPTGVSHDGILRGPVLVARAPCHAASDLQAWTAVNL 549
            TL++   S P  P++ +   +++LL  G     L   L E       EL +   L D  + ++ L       +  +  AT+ + ++      RA  LI  G   +       +     +  D + D+  +RI  S     VPDP+G L+ GQV++ F        P T ++ D +L+G VLV R P H ASD+Q  TAV++
Sbjct:  918 TLDICNTSKPLKPSALNLQFIIILLHNGVTEATLEELLREDIRNEVTELFKDGRLDDGASLRKYLERVKLSGSRRETRATAMKGRIPLGLAERAVDLINAGFTLQNQTLKGWFGTVLTDHCDTLKDKMRIRIPWSCQPYCVPDPSGKLKKGQVYLRFGPESKFIDPKTMMAID-VLKGDVLVGRNPAHFASDIQKVTAVDV 1117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90525.20988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
W7HVG3_9PEZI8.850e-1031.00RNA-dependent RNA polymerase n=1 Tax=Drechslerella... [more]
A0A1X2I9U5_9FUNG5.270e-737.78RNA-dependent RNA polymerase n=1 Tax=Absidia repen... [more]
A0A436ZNP6_9PEZI8.260e-643.75RNA-directed RNA polymerase n=1 Tax=Arthrobotrys f... [more]
UPI0019076D011.490e-545.21RNA dependent RNA polymerase-domain-containing pro... [more]
A0A168SEA0_ABSGL1.550e-535.56RNA-directed RNA polymerase n=1 Tax=Absidia glauca... [more]
A0A163ABK2_PHYB84.940e-535.16RNA-dependent RNA polymerase n=1 Tax=Phycomyces bl... [more]
A0A8H7VMU2_9FUNG4.990e-535.29RNA-dependent RNA polymerase n=1 Tax=Mucor circina... [more]
A0A7C8U3U9_ORBOL6.710e-530.58RNA-dependent RNA polymerase n=1 Tax=Orbilia oligo... [more]
A0A8H7BPM7_9FUNG9.090e-533.33RNA-dependent RNA polymerase n=1 Tax=Apophysomyces... [more]
A0A7C8N669_ORBOL9.320e-527.86RNA-directed RNA polymerase n=1 Tax=Orbilia oligos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90525contigM-pyrifera_M_contig90525:150..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size549
Cds size537
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.1633465-UTR-M-pyrifera_M_contig90525:149..1611622816817.1633465-UTR-M-pyrifera_M_contig90525:149..161Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90525 150..161 +
1692278195.7270808-UTR-M-pyrifera_M_contig90525:149..1611692278195.7270808-UTR-M-pyrifera_M_contig90525:149..161Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90525 150..161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.1772902-CDS-M-pyrifera_M_contig90525:161..6981622816817.1772902-CDS-M-pyrifera_M_contig90525:161..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90525 162..698 +
1692278195.7455559-CDS-M-pyrifera_M_contig90525:161..6981692278195.7455559-CDS-M-pyrifera_M_contig90525:161..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90525 162..698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90525.20988.1prot_M-pyrifera_M_contig90525.20988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90525 162..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90525.20988.1

>prot_M-pyrifera_M_contig90525.20988.1 ID=prot_M-pyrifera_M_contig90525.20988.1|Name=mRNA_M-pyrifera_M_contig90525.20988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
MRFSSPPAPASTHFALLVLLLSWGCPCGVLRARLSERAAELRRALRDLET
CKRVLLEAGHGATIDQVAATSTRSQVGRAAALIAYGMDAEPAVASATYNV
GRAELDAVVDRGALRIEQSRSLLLVPDPTGLLQPGQVFVHFSCPPTGVSH
DGILRGPVLVARAPCHAASDLQAWTAVNL
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mRNA from alignment at M-pyrifera_M_contig90525:150..698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90525.20988.1 ID=mRNA_M-pyrifera_M_contig90525.20988.1|Name=mRNA_M-pyrifera_M_contig90525.20988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig90525:150..698+ (Macrocystis pyrifera P11B4 male)
ACATTGGAAGTGATGCGGTTTTCAAGTCCACCTGCACCAGCGAGCACTCA TTTTGCGTTGTTAGTTTTGTTGTTGTCGTGGGGTTGCCCTTGTGGTGTCC TACGTGCTCGATTATCAGAGCGTGCAGCAGAATTGAGACGTGCATTGCGA GACTTGGAAACGTGTAAACGTGTTTTGTTGGAGGCTGGACATGGAGCAAC AATTGATCAAGTTGCTGCAACTTCCACGCGGTCTCAAGTTGGTCGAGCTG CTGCATTGATTGCGTATGGGATGGATGCGGAACCAGCAGTGGCTTCTGCA ACATACAATGTGGGAAGAGCGGAATTAGATGCAGTCGTTGATCGTGGGGC ATTGCGGATTGAACAATCCCGCTCTCTTCTCTTGGTACCTGATCCAACAG GTTTACTTCAACCTGGACAAGTCTTTGTGCACTTTTCATGTCCTCCCACT GGTGTATCGCATGATGGCATACTTCGTGGACCTGTTCTTGTTGCACGTGC TCCATGTCATGCTGCTTCAGACCTACAAGCTTGGACTGCTGTGAATTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90525:150..698+

>mRNA_M-pyrifera_M_contig90525.20988.1 ID=mRNA_M-pyrifera_M_contig90525.20988.1|Name=mRNA_M-pyrifera_M_contig90525.20988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig90525:150..698+ (Macrocystis pyrifera P11B4 male)
ATGCGGTTTTCAAGTCCACCTGCACCAGCGAGCACTCATTTTGCGTTGTT
AGTTTTGTTGTTGTCGTGGGGTTGCCCTTGTGGTGTCCTACGTGCTCGAT
TATCAGAGCGTGCAGCAGAATTGAGACGTGCATTGCGAGACTTGGAAACG
TGTAAACGTGTTTTGTTGGAGGCTGGACATGGAGCAACAATTGATCAAGT
TGCTGCAACTTCCACGCGGTCTCAAGTTGGTCGAGCTGCTGCATTGATTG
CGTATGGGATGGATGCGGAACCAGCAGTGGCTTCTGCAACATACAATGTG
GGAAGAGCGGAATTAGATGCAGTCGTTGATCGTGGGGCATTGCGGATTGA
ACAATCCCGCTCTCTTCTCTTGGTACCTGATCCAACAGGTTTACTTCAAC
CTGGACAAGTCTTTGTGCACTTTTCATGTCCTCCCACTGGTGTATCGCAT
GATGGCATACTTCGTGGACCTGTTCTTGTTGCACGTGCTCCATGTCATGC
TGCTTCAGACCTACAAGCTTGGACTGCTGTGAATTTGATGCGGTTTTCAA
GTCCACCTGCACCAGCGAGCACTCATTTTGCGTTGTTAGTTTTGTTGTTG
TCGTGGGGTTGCCCTTGTGGTGTCCTACGTGCTCGATTATCAGAGCGTGC
AGCAGAATTGAGACGTGCATTGCGAGACTTGGAAACGTGTAAACGTGTTT
TGTTGGAGGCTGGACATGGAGCAACAATTGATCAAGTTGCTGCAACTTCC
ACGCGGTCTCAAGTTGGTCGAGCTGCTGCATTGATTGCGTATGGGATGGA
TGCGGAACCAGCAGTGGCTTCTGCAACATACAATGTGGGAAGAGCGGAAT
TAGATGCAGTCGTTGATCGTGGGGCATTGCGGATTGAACAATCCCGCTCT
CTTCTCTTGGTACCTGATCCAACAGGTTTACTTCAACCTGGACAAGTCTT
TGTGCACTTTTCATGTCCTCCCACTGGTGTATCGCATGATGGCATACTTC
GTGGACCTGTTCTTGTTGCACGTGCTCCATGTCATGCTGCTTCAGACCTA
CAAGCTTGGACTGCTGTGAATTTG
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