mRNA_M-pyrifera_M_contig88942.20631.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88942.20631.1
Unique NamemRNA_M-pyrifera_M_contig88942.20631.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A4W4EQX0_ELEEL (RING-type E3 ubiquitin transferase n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4EQX0_ELEEL)

HSP 1 Score: 59.3 bits (142), Expect = 7.360e-9
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   13 DERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRRFIAVFE 171
            +E  C+ C++  R  V+  CGH+C C +C + L  P CPMCR R+RR +A+++
Sbjct:  288 EENTCVICLSNPRGCVLLDCGHVCCCYSCYQALPQPNCPMCRQRIRRVVALYQ 340          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A0S4JX55_BODSA (Zinc finger protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JX55_BODSA)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-7
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1
Query:    4 GMDDERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCR 138
            G DD+  C+ C++  +  V+ PCGH CVC +CA    +P CPMCR
Sbjct:  177 GSDDDSECVICLSAAKDTVLVPCGHYCVCSSCAAN--VPSCPMCR 219          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A1S4HCF5_ANOGA (RING-type domain-containing protein n=5 Tax=gambiae species complex TaxID=44542 RepID=A0A1S4HCF5_ANOGA)

HSP 1 Score: 55.8 bits (133), Expect = 1.290e-7
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   22 NCITCVTRIRKVVMWPCGHLCVCRTCARRLAI--PECPMCRARVRRFIAVF 168
            +CI C    R +V  PCGHLCVC+TCAR +A   P CP+CR  + + + V+
Sbjct:  324 SCIICEDDDRTIVFVPCGHLCVCKTCARNIAYYNPVCPVCRTHIEKQLKVY 374          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: UPI00193A78B4 (baculoviral IAP repeat-containing protein 3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A78B4)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-7
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query:    7 MDDERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRRFIAVFE 171
            ++ ER C  C+T    ++  PCGH+C C TCARRL    CP+CR  + RFI  + 
Sbjct:  728 LERERTCKICLTLPADILFQPCGHICSCATCARRLY--NCPVCRRAINRFIRTYH 780          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: E9AMX2_LEIMU (RING-type domain-containing protein n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9AMX2_LEIMU)

HSP 1 Score: 55.1 bits (131), Expect = 2.440e-7
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    7 MDDERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRR 153
            MDD+  C+ C  R   V + PCGH+C C  CARRL   ECP+CR+ ++R
Sbjct:  171 MDDKVGCVICCARHIDVALTPCGHVCCCHFCARRLH--ECPVCRSAIQR 217          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A182Y3B9_ANOST (RING-type domain-containing protein n=1 Tax=Anopheles stephensi TaxID=30069 RepID=A0A182Y3B9_ANOST)

HSP 1 Score: 54.3 bits (129), Expect = 4.310e-7
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 1
Query:   22 NCITCVTRIRKVVMWPCGHLCVCRTCARRLAI--PECPMCRARVRRFIAVF 168
            NCI C    R V   PCGHLCVC+ CAR L    P CP+CR  + R + V+
Sbjct:  262 NCIICEDNERTVAFIPCGHLCVCKACARELCYYNPLCPLCRKFIERKLEVY 312          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A4Z1T8W4_GIAMU (RING finger domain-containing protein n=1 Tax=Giardia muris TaxID=5742 RepID=A0A4Z1T8W4_GIAMU)

HSP 1 Score: 52.4 bits (124), Expect = 5.060e-7
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 1
Query:   25 CITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRRFIAVF 168
            C+ C+   +  ++ PCGHLCVC TCA R+    CP CR  + R I  +
Sbjct:   39 CVICLMNPKDTLLQPCGHLCVCSTCAGRIMNQTCPFCRTPIERVIKAY 86          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A210PWU6_MIZYE (RING-type E3 ubiquitin transferase n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PWU6_MIZYE)

HSP 1 Score: 53.9 bits (128), Expect = 6.190e-7
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   25 CITCVTRIRKVVMWPCGHLCVCRTCARRLAIPE-CPMCRARVRRFIAVFE 171
            C+ C+T  R+VV+  CGH+C+C  C   L  P  CP+CRARV RF+  + 
Sbjct:  322 CVVCLTNPREVVLISCGHICLCLDCTDLLPTPLLCPVCRARVERFVPYYR 371          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A4Z1SNN5_GIAMU (Ankyrin repeat protein 2 n=1 Tax=Giardia muris TaxID=5742 RepID=A0A4Z1SNN5_GIAMU)

HSP 1 Score: 53.5 bits (127), Expect = 7.220e-7
Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 1
Query:    1 SGMDDERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRRFIAV 165
            + + D   CI C+   +  ++ PCGHLCVC TCA+++    CP+CR  +   + V
Sbjct:  211 NSISDPLTCIVCLRNPKDTLLQPCGHLCVCSTCAKQIMNQTCPLCRTPIESTVKV 265          
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Match: A0A0N1J4K0_9TRYP (RING-type domain-containing protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0N1J4K0_9TRYP)

HSP 1 Score: 53.5 bits (127), Expect = 8.550e-7
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    7 MDDERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRR 153
            ++D   C+ C  R   V + PCGH+C CR CA+RL   ECP+CRA V+R
Sbjct:  171 IEDSVACVICCARHIDVALTPCGHVCCCRFCAKRLK--ECPVCRATVQR 217          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88942.20631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4W4EQX0_ELEEL7.360e-941.51RING-type E3 ubiquitin transferase n=1 Tax=Electro... [more]
A0A0S4JX55_BODSA1.150e-746.67Zinc finger protein, putative n=1 Tax=Bodo saltans... [more]
A0A1S4HCF5_ANOGA1.290e-747.06RING-type domain-containing protein n=5 Tax=gambia... [more]
UPI00193A78B41.320e-743.64baculoviral IAP repeat-containing protein 3-like n... [more]
E9AMX2_LEIMU2.440e-748.98RING-type domain-containing protein n=1 Tax=Leishm... [more]
A0A182Y3B9_ANOST4.310e-749.02RING-type domain-containing protein n=1 Tax=Anophe... [more]
A0A4Z1T8W4_GIAMU5.060e-741.67RING finger domain-containing protein n=1 Tax=Giar... [more]
A0A210PWU6_MIZYE6.190e-746.00RING-type E3 ubiquitin transferase n=1 Tax=Mizuhop... [more]
A0A4Z1SNN5_GIAMU7.220e-736.36Ankyrin repeat protein 2 n=1 Tax=Giardia muris Tax... [more]
A0A0N1J4K0_9TRYP8.550e-748.98RING-type domain-containing protein n=1 Tax=Leptom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88942contigM-pyrifera_M_contig88942:372..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.2576437-CDS-M-pyrifera_M_contig88942:371..5391622816799.2576437-CDS-M-pyrifera_M_contig88942:371..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88942 372..539 -
1692278185.5793476-CDS-M-pyrifera_M_contig88942:371..5391692278185.5793476-CDS-M-pyrifera_M_contig88942:371..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88942 372..539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.2689395-UTR-M-pyrifera_M_contig88942:539..5451622816799.2689395-UTR-M-pyrifera_M_contig88942:539..545Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88942 540..545 -
1692278185.5997195-UTR-M-pyrifera_M_contig88942:539..5451692278185.5997195-UTR-M-pyrifera_M_contig88942:539..545Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88942 540..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88942.20631.1prot_M-pyrifera_M_contig88942.20631.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88942 372..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88942.20631.1

>prot_M-pyrifera_M_contig88942.20631.1 ID=prot_M-pyrifera_M_contig88942.20631.1|Name=mRNA_M-pyrifera_M_contig88942.20631.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MDDERNCITCVTRIRKVVMWPCGHLCVCRTCARRLAIPECPMCRARVRRF
IAVFE*
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mRNA from alignment at M-pyrifera_M_contig88942:372..545-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88942.20631.1 ID=mRNA_M-pyrifera_M_contig88942.20631.1|Name=mRNA_M-pyrifera_M_contig88942.20631.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig88942:372..545- (Macrocystis pyrifera P11B4 male)
AGTGGGATGGATGACGAAAGAAATTGCATTACTTGTGTCACCAGAATCCG AAAAGTTGTAATGTGGCCATGTGGACACTTGTGTGTGTGTCGAACTTGTG CACGAAGGCTTGCAATTCCAGAATGTCCCATGTGTCGAGCAAGAGTAAGG AGATTCATTGCAGTATTTGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88942:372..545-

>mRNA_M-pyrifera_M_contig88942.20631.1 ID=mRNA_M-pyrifera_M_contig88942.20631.1|Name=mRNA_M-pyrifera_M_contig88942.20631.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig88942:372..545- (Macrocystis pyrifera P11B4 male)
ATGGATGACGAAAGAAATTGCATTACTTGTGTCACCAGAATCCGAAAAGT
TGTAATGTGGCCATGTGGACACTTGTGTGTGTGTCGAACTTGTGCACGAA
GGCTTGCAATTCCAGAATGTCCCATGTGTCGAGCAAGAGTAAGGAGATTC
ATTGCAGTATTTGAGTGAATGGATGACGAAAGAAATTGCATTACTTGTGT
CACCAGAATCCGAAAAGTTGTAATGTGGCCATGTGGACACTTGTGTGTGT
GTCGAACTTGTGCACGAAGGCTTGCAATTCCAGAATGTCCCATGTGTCGA
GCAAGAGTAAGGAGATTCATTGCAGTATTTGAGTGA
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