mRNA_M-pyrifera_M_contig79810.18722.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79810.18722.1
Unique NamemRNA_M-pyrifera_M_contig79810.18722.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79810.18722.1 vs. uniprot
Match: A7NQ13_ROSCS (FHA domain containing protein n=2 Tax=Roseiflexus castenholzii TaxID=120962 RepID=A7NQ13_ROSCS)

HSP 1 Score: 57.8 bits (138), Expect = 6.380e-8
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 NKLFIEDIRLSRNHLMVTWSQAGWMAEDLNSYGGTMLTRTEVMHQPVELRAGDVLSLSDGIVTLTVAQAVH 213
            N + ++D ++SR+HL +TW+ A ++AED+ S GGT+L     +  P  LR GD L+L D ++ L +   V 
Sbjct:   70 NTILLDDPKISRHHLRLTWNGAAFVAEDVGSSGGTLLNGVS-LRAPTALRPGDTLTLGDTMLRLGIVSEVE 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79810.18722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A7NQ13_ROSCS6.380e-838.03FHA domain containing protein n=2 Tax=Roseiflexus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79810contigM-pyrifera_M_contig79810:421..717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.6507344-CDS-M-pyrifera_M_contig79810:420..5551622816701.6507344-CDS-M-pyrifera_M_contig79810:420..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79810 421..555 +
1692278128.3327742-CDS-M-pyrifera_M_contig79810:420..5551692278128.3327742-CDS-M-pyrifera_M_contig79810:420..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79810 421..555 +
1622816701.6622121-CDS-M-pyrifera_M_contig79810:618..7171622816701.6622121-CDS-M-pyrifera_M_contig79810:618..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79810 619..717 +
1692278128.3450518-CDS-M-pyrifera_M_contig79810:618..7171692278128.3450518-CDS-M-pyrifera_M_contig79810:618..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79810 619..717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79810.18722.1prot_M-pyrifera_M_contig79810.18722.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79810 421..717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79810.18722.1

>prot_M-pyrifera_M_contig79810.18722.1 ID=prot_M-pyrifera_M_contig79810.18722.1|Name=mRNA_M-pyrifera_M_contig79810.18722.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
NKLFIEDIRLSRNHLMVTWSQAGWMAEDLNSYGGTMLTRTEVMHQPVELR
AGDVLSLSDGIVTLTVAQAVHEQPKAS*
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mRNA from alignment at M-pyrifera_M_contig79810:421..717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79810.18722.1 ID=mRNA_M-pyrifera_M_contig79810.18722.1|Name=mRNA_M-pyrifera_M_contig79810.18722.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig79810:421..717+ (Macrocystis pyrifera P11B4 male)
AACAAGCTCTTCATCGAAGACATTCGCCTCAGCAGGAACCACTTGATGGT
CACCTGGAGCCAGGCCGGCTGGATGGCCGAGGACCTCAACAGCTACGGCG
GGACAATGCTGACGCGCACCGAGGTCATGCACCAGGTCATCGACGGCAAG
GAGGTGGCGGAGGAGGTGAAGACCACGAGCAAGATGGACGCCGGCCAGCC
GGTCGAGCTGCGTGCGGGTGACGTGCTGTCGCTCTCCGATGGCATTGTGA
CGCTCACCGTCGCTCAGGCGGTGCACGAGCAGCCGAAAGCATCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79810:421..717+

>mRNA_M-pyrifera_M_contig79810.18722.1 ID=mRNA_M-pyrifera_M_contig79810.18722.1|Name=mRNA_M-pyrifera_M_contig79810.18722.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig79810:421..717+ (Macrocystis pyrifera P11B4 male)
AACAAGCTCTTCATCGAAGACATTCGCCTCAGCAGGAACCACTTGATGGT
CACCTGGAGCCAGGCCGGCTGGATGGCCGAGGACCTCAACAGCTACGGCG
GGACAATGCTGACGCGCACCGAGGTCATGCACCAGAACAAGCTCTTCATC
GAAGACATTCGCCTCAGCAGGAACCACTTGATGGTCACCTGGAGCCAGGC
CGGCTGGATGGCCGAGGACCTCAACAGCTACGGCGGGACAATGCTGACGC
GCACCGAGGTCATGCACCAGCCGGTCGAGCTGCGTGCGGGTGACGTGCTG
TCGCTCTCCGATGGCATTGTGACGCTCACCGTCGCTCAGGCGGTGCACGA
GCAGCCGAAAGCATCCTGACCGGTCGAGCTGCGTGCGGGTGACGTGCTGT
CGCTCTCCGATGGCATTGTGACGCTCACCGTCGCTCAGGCGGTGCACGAG
CAGCCGAAAGCATCCTGA
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